Detailed information NTG0085474

Bioinformatically predicted

Overview

• Name: comA
• Type: Machinery gene
• Locus tag: PproGo58_RS08780
• Genome accession: NZ_AP024503
• Coordinates: 1931644..1933875 (+)
• Length: 743 a.a.
• NCBI ID: WP_207167289.1
• Uniprot ID: -
• Organism: Pseudomonas protegens strain Go58
• Function: ssDNA transport through the inner membrane (predicted from homology) DNA binding and uptake

Genomic Context

Location: 1926644..1938875

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
PproGo58_RS08755 (PproGo58_17340)	-	1927769..1928428 (+)	660	WP_207167288.1	transglutaminase family protein	-
PproGo58_RS08760 (PproGo58_17350)	-	1928471..1929094 (+)	624	WP_102863932.1	glutathione S-transferase	-
PproGo58_RS08765 (PproGo58_17360)	-	1929227..1930159 (+)	933	WP_102863931.1	ABC transporter ATP-binding protein	-
PproGo58_RS08770 (PproGo58_17370)	-	1930156..1930935 (+)	780	WP_102863930.1	ABC transporter permease	-
PproGo58_RS08775 (PproGo58_17380)	-	1930989..1931504 (-)	516	WP_102863929.1	DUF2062 domain-containing protein	-
PproGo58_RS08780 (PproGo58_17390)	comA	1931644..1933875 (+)	2232	WP_207167289.1	DNA internalization-related competence protein ComEC/Rec2	Machinery gene
PproGo58_RS08785 (PproGo58_17400)	exbB	1933978..1934613 (+)	636	WP_162884118.1	MotA/TolQ/ExbB proton channel family protein	Machinery gene
PproGo58_RS08790 (PproGo58_17410)	-	1934610..1935038 (+)	429	WP_102863926.1	biopolymer transporter ExbD	-
PproGo58_RS08795 (PproGo58_17420)	lpxK	1935038..1936048 (+)	1011	WP_102863925.1	tetraacyldisaccharide 4'-kinase	-
PproGo58_RS08800 (PproGo58_17430)	-	1936072..1936257 (+)	186	WP_011060103.1	Trm112 family protein	-
PproGo58_RS08805 (PproGo58_17440)	kdsB	1936254..1937018 (+)	765	WP_102863924.1	3-deoxy-manno-octulosonate cytidylyltransferase	-
PproGo58_RS08810 (PproGo58_17450)	-	1937018..1937482 (+)	465	WP_102863923.1	low molecular weight protein-tyrosine-phosphatase	-
PproGo58_RS08815 (PproGo58_17460)	murB	1937479..1938498 (+)	1020	WP_102863922.1	UDP-N-acetylmuramate dehydrogenase	-

Sequence

Protein

• Length: 743 a.a.
• Molecular weight: 81582.03 Da
• Isoelectric Point: 10.7062

>NTDB_id=85474 PproGo58_RS08780 WP_207167289.1 1931644..1933875(+) (comA) [Pseudomonas protegens strain Go58]
MVTGMLALAAGLLALGFMPVLPPGWLLLLMAIGGLMLLPFRTHPVAFFLFGLAWACASGQWALDDHLPQFLDGQTRWLEG
RVVGLPEPGAGVVRFELRDAQSRRERLPRRIRLAWHGGPPVNSGERWRLAVKLRRPAGLLNLHGFDYEAWLLARRIGATG
TVKDGQLLAPARHAWRDGLRRRVLAVEAHGRAAGLAALVMGDGSGLTREDWQLLQDTGTVHLMVISGQHISLLAAVIYLA
VAGLARYGLWPARWPWLPWACALAFVGALGYGLLAGFDVPVQRACVMVALVLLWRWRFRHLRAWWPLLLALNAVLLFEPL
ASLQPGFWLSYAAVAVLIFTFAGRLGSWRWWQSWTRAQWLMGIGLLPPLLALGLPISLSGPLANLLAVPWISLLVLPPAL
LGCLLLPVPYVGEGLLWLAGGLLDGLFRLLGAMAGFWPAWVAPLIPLWVWGLSSLGALLLLLPKGVPLRVLGWPLLLLAV
WPPQDPVPEGEVEIWQLDVGQGLSFILRTRDHAMLYDTGARVADFDLGERVVLPTLHKLGIRRLDLMLLSHADNDHAGGA
LAVQRGIPVSQVRSGEPEALPAALQSAPCDSGLSWHWNGARFTLWQWAGAADGNQASCVLLVEAGGERLLLTGDIDVHAE
RALLDSPLAVRIHWLQAPHHGSRTSSSMALLRRLAPKAVLISRGRGNAFGHPHPQVVARYRHLGMVIHDSAEQGALKLRL
GTFGQPESLRQQRRFWREWPAMP

Nucleotide

• Length: 2232 bp

>NTDB_id=85474 PproGo58_RS08780 WP_207167289.1 1931644..1933875(+) (comA) [Pseudomonas protegens strain Go58]
ATGGTTACAGGGATGCTGGCCCTGGCCGCAGGACTGCTGGCGCTGGGTTTCATGCCGGTGCTGCCGCCCGGCTGGTTGTT
GCTGCTGATGGCGATAGGGGGGCTGATGTTGCTGCCTTTTCGTACACATCCGGTGGCATTTTTTTTGTTCGGTTTGGCCT
GGGCCTGTGCATCCGGGCAATGGGCGCTGGATGATCACCTGCCCCAGTTCCTGGATGGGCAAACCCGCTGGCTGGAAGGG
CGGGTGGTCGGCTTGCCGGAACCGGGGGCGGGCGTGGTGCGCTTTGAGCTCAGGGATGCCCAGTCCCGACGAGAGCGCCT
GCCGCGGCGAATTCGCCTGGCCTGGCACGGTGGGCCACCTGTCAATAGCGGCGAACGCTGGCGCCTGGCGGTCAAGCTGC
GGCGTCCTGCCGGTCTGCTCAATCTTCACGGTTTCGATTACGAAGCCTGGCTGCTGGCCCGGCGCATTGGGGCCACCGGC
ACAGTCAAGGATGGGCAACTGCTGGCGCCGGCACGCCACGCCTGGCGTGATGGGCTGCGCCGGCGTGTACTCGCGGTCGA
GGCCCACGGCCGCGCCGCAGGCCTGGCGGCATTGGTGATGGGCGACGGTTCGGGGCTGACGCGGGAAGATTGGCAACTGT
TGCAGGACACCGGCACGGTGCACCTGATGGTGATATCCGGACAGCACATCAGCCTGCTGGCCGCAGTGATCTACCTTGCA
GTGGCAGGGCTGGCTCGTTACGGGCTTTGGCCCGCGCGCTGGCCCTGGCTGCCCTGGGCCTGCGCCCTGGCCTTTGTCGG
GGCGCTGGGCTACGGCCTGCTGGCAGGGTTCGATGTGCCGGTGCAGAGGGCCTGCGTGATGGTTGCGCTGGTGCTGCTCT
GGCGCTGGCGCTTTCGTCACCTGCGGGCTTGGTGGCCCTTGTTGCTGGCGTTGAATGCAGTGCTGTTGTTCGAGCCCCTG
GCCAGCTTGCAGCCAGGGTTCTGGCTGTCCTATGCCGCGGTGGCGGTGCTCATCTTCACCTTTGCCGGGCGCCTGGGTTC
CTGGCGTTGGTGGCAGAGTTGGACCCGCGCCCAGTGGTTGATGGGTATTGGCCTGTTGCCCCCCTTGCTGGCCCTTGGCT
TGCCCATCAGTCTCAGTGGTCCGCTGGCCAACCTGCTGGCGGTGCCCTGGATCAGTCTGCTGGTCCTGCCCCCGGCCTTG
CTGGGCTGTCTGTTGTTGCCTGTGCCATATGTGGGCGAAGGCCTGTTATGGCTGGCGGGTGGCCTGCTGGATGGGCTGTT
CCGCTTACTGGGGGCGATGGCCGGATTTTGGCCAGCCTGGGTGGCGCCGTTGATCCCCCTTTGGGTTTGGGGCCTGAGCA
GCTTGGGCGCGCTGTTGTTGCTGTTGCCCAAGGGCGTGCCACTGCGGGTGCTGGGTTGGCCGTTGTTGCTGTTGGCAGTC
TGGCCTCCCCAGGACCCTGTACCCGAGGGCGAGGTGGAGATCTGGCAGCTGGATGTGGGGCAGGGGTTGTCGTTCATCCT
GCGTACCCGTGATCACGCGATGTTGTATGACACCGGTGCGCGAGTCGCGGATTTCGACCTGGGGGAGCGAGTGGTGCTGC
CGACGCTGCATAAACTTGGCATTCGACGGTTGGACTTGATGCTGCTCAGCCACGCCGATAACGATCATGCCGGAGGCGCC
CTGGCAGTCCAGCGCGGGATACCGGTGAGCCAGGTGCGCAGCGGCGAGCCTGAGGCCTTGCCGGCTGCCCTGCAGTCGGC
TCCCTGTGATAGCGGGCTGAGCTGGCACTGGAATGGCGCCCGCTTCACGCTGTGGCAGTGGGCGGGGGCGGCAGACGGCA
ACCAGGCTTCCTGTGTGCTGCTGGTCGAGGCCGGCGGCGAACGCCTGCTGCTCACCGGCGATATCGATGTCCATGCTGAG
CGTGCCTTGCTCGACAGTCCGCTGGCGGTTCGCATTCACTGGTTGCAGGCGCCCCATCATGGCAGCCGTACCTCATCCTC
CATGGCCTTGCTCCGGCGGCTGGCGCCGAAGGCGGTGCTGATTTCCCGGGGGCGGGGCAATGCCTTTGGCCATCCTCATC
CCCAGGTGGTGGCGCGCTACCGGCACTTGGGCATGGTGATTCATGACAGTGCCGAGCAAGGTGCACTGAAGCTGCGGCTG
GGGACTTTCGGCCAGCCTGAAAGCCTGCGCCAACAGCGGCGCTTCTGGCGCGAATGGCCAGCAATGCCTTAA

Domains

Predicted by InterproScan.

• Competence protein (Competence) (198-464)

• Domain of unknown function (DUF4131) (DUF4131) (21-167)

• Metallo-beta-lactamase superfamily (Lactamase_B) (498-682)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
comA	Pseudomonas stutzeri DSM 10701	63.598	96.501	0.614