Detailed information    

insolico Bioinformatically predicted

Overview

Name   exbB   Type   Machinery gene
Locus tag   PproGo58_RS08785 Genome accession   NZ_AP024503
Coordinates   1933978..1934613 (+) Length   211 a.a.
NCBI ID   WP_162884118.1    Uniprot ID   -
Organism   Pseudomonas protegens strain Go58     
Function   ssDNA transport through the inner membrane (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1928978..1939613
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  PproGo58_RS08765 (PproGo58_17360) - 1929227..1930159 (+) 933 WP_102863931.1 ABC transporter ATP-binding protein -
  PproGo58_RS08770 (PproGo58_17370) - 1930156..1930935 (+) 780 WP_102863930.1 ABC transporter permease -
  PproGo58_RS08775 (PproGo58_17380) - 1930989..1931504 (-) 516 WP_102863929.1 DUF2062 domain-containing protein -
  PproGo58_RS08780 (PproGo58_17390) comA 1931644..1933875 (+) 2232 WP_207167289.1 DNA internalization-related competence protein ComEC/Rec2 Machinery gene
  PproGo58_RS08785 (PproGo58_17400) exbB 1933978..1934613 (+) 636 WP_162884118.1 MotA/TolQ/ExbB proton channel family protein Machinery gene
  PproGo58_RS08790 (PproGo58_17410) - 1934610..1935038 (+) 429 WP_102863926.1 biopolymer transporter ExbD -
  PproGo58_RS08795 (PproGo58_17420) lpxK 1935038..1936048 (+) 1011 WP_102863925.1 tetraacyldisaccharide 4'-kinase -
  PproGo58_RS08800 (PproGo58_17430) - 1936072..1936257 (+) 186 WP_011060103.1 Trm112 family protein -
  PproGo58_RS08805 (PproGo58_17440) kdsB 1936254..1937018 (+) 765 WP_102863924.1 3-deoxy-manno-octulosonate cytidylyltransferase -
  PproGo58_RS08810 (PproGo58_17450) - 1937018..1937482 (+) 465 WP_102863923.1 low molecular weight protein-tyrosine-phosphatase -
  PproGo58_RS08815 (PproGo58_17460) murB 1937479..1938498 (+) 1020 WP_102863922.1 UDP-N-acetylmuramate dehydrogenase -
  PproGo58_RS08820 (PproGo58_17470) - 1938750..1939220 (+) 471 WP_207167290.1 (2Fe-2S)-binding protein -

Sequence

Protein


Download         Length: 211 a.a.        Molecular weight: 22939.10 Da        Isoelectric Point: 7.3617

>NTDB_id=85475 PproGo58_RS08785 WP_162884118.1 1933978..1934613(+) (exbB) [Pseudomonas protegens strain Go58]
MWELVKSGGWMMLPIILSSIAAVGIIAERLWTLRASRVTPPHLLGQVWRWIKDKQLNKEKLKELRADSPLGEILAAGLAN
SKHGREIMKECIEEAAARVIHELERYLNALGTIAAMAPLLGLLGTVLGMIDIFSSFMGSGMTSNAAVLAGGISKALITTA
AGLMVGIPSVFFHRFLQRRVDELVVGMEQEAIKLVEVIQGDRDVDLAEGKA

Nucleotide


Download         Length: 636 bp        

>NTDB_id=85475 PproGo58_RS08785 WP_162884118.1 1933978..1934613(+) (exbB) [Pseudomonas protegens strain Go58]
GTGTGGGAATTGGTCAAATCCGGCGGCTGGATGATGTTGCCGATCATTCTGAGTTCCATCGCGGCTGTGGGCATCATCGC
CGAGCGTTTGTGGACCCTGCGGGCCAGCCGAGTCACCCCGCCCCATTTGCTGGGCCAGGTCTGGCGCTGGATCAAGGACA
AGCAACTCAATAAGGAGAAACTCAAGGAACTGCGTGCCGATTCGCCCCTGGGAGAGATCCTGGCAGCGGGCCTGGCCAAC
TCCAAGCATGGTCGCGAGATCATGAAGGAATGCATCGAGGAGGCGGCGGCCCGGGTCATTCACGAACTCGAGCGCTACCT
CAACGCCCTCGGCACCATCGCCGCCATGGCGCCCTTGCTGGGCCTGCTGGGTACGGTGCTGGGCATGATCGATATCTTCA
GTTCGTTCATGGGGTCGGGCATGACCAGCAACGCTGCAGTGCTTGCCGGTGGTATTTCCAAGGCACTGATCACCACTGCC
GCCGGTTTGATGGTGGGTATTCCTTCGGTGTTCTTCCACCGTTTCCTGCAACGCCGGGTCGATGAGCTGGTGGTGGGCAT
GGAACAGGAAGCGATCAAGCTGGTGGAAGTGATCCAGGGCGACCGCGATGTCGACCTGGCTGAGGGCAAAGCGTGA

Domains

Predicted by InterproScan.

MotA/TolQ/ExbB proton channel family (MotA_ExbB)

(66-188)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  exbB Pseudomonas stutzeri DSM 10701

87.678

100

0.877

Multiple sequence alignment