Detailed information    

insolico Bioinformatically predicted

Overview

Name   uvrB   Type   Machinery gene
Locus tag   V1460_RS25955 Genome accession   NZ_CP146101
Coordinates   5788304..5790457 (-) Length   717 a.a.
NCBI ID   WP_338676031.1    Uniprot ID   -
Organism   Streptomyces sp. SCSIO 30461     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 5783304..5795457
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  V1460_RS25940 (V1460_25940) - 5784160..5785173 (-) 1014 WP_338676028.1 TerC family protein -
  V1460_RS25945 (V1460_25945) - 5785451..5787451 (-) 2001 WP_338676029.1 TerD family protein -
  V1460_RS25950 (V1460_25950) - 5787577..5788155 (-) 579 WP_338676030.1 TerD family protein -
  V1460_RS25955 (V1460_25955) uvrB 5788304..5790457 (-) 2154 WP_338676031.1 excinuclease ABC subunit UvrB Machinery gene
  V1460_RS25960 (V1460_25960) - 5790565..5791458 (-) 894 WP_338676032.1 reverse transcriptase domain-containing protein -
  V1460_RS25965 (V1460_25965) - 5792197..5793015 (-) 819 WP_338676033.1 MHYT domain-containing protein -
  V1460_RS25970 (V1460_25970) - 5793261..5793815 (+) 555 WP_338676034.1 methylated-DNA--[protein]-cysteine S-methyltransferase -
  V1460_RS25975 (V1460_25975) - 5794039..5795406 (+) 1368 WP_338676035.1 MFS transporter -

Sequence

Protein


Download         Length: 717 a.a.        Molecular weight: 80562.39 Da        Isoelectric Point: 4.9640

>NTDB_id=854660 V1460_RS25955 WP_338676031.1 5788304..5790457(-) (uvrB) [Streptomyces sp. SCSIO 30461]
MRPVTQIERSMAPFEVVSPYRPNGDQPTAIAELEKRVRAGEKDIVLLGATGTGKSATTAWMIEKLQRPTLVMAPNKTLAA
QLANEFRELLPNNAVEYFVSYYDYYQPEAYVPQSDTYIEKDSSINEEVERLRHSATNSLLTRRDVVVVASVSCIYGLGTP
QEYVDRMVPLKVGAEIDRDQLLRRFVDIQYTRNDLAFTRGTFRVRGDTIEIFPVYEELAVRIEMFGDEIEALSTLHPLTG
EVISDDHELYVFPASHYVAGPERMEKAVNGIERELEERLAELDKQGKLLESQRLRMRTTYDIEMLRQIGSCSGVENYSMH
FDDREPGTPPNTLLDYFPEDFLLVIDESHVTVPQIGAMYEGDASRKRTLVDHGFRLPSALDNRPLKWEEFQKRIGQTVYL
SATPGSYELSRSDGFVEQIIRPTGLVDPEVVVKSTEGQIDDLVHEIRKRTDKDERVLVTTLTKKMAEDLTDYFLELGIKV
RYLHSDVDTLRRIELLRELRAGEYDVLVGINLLREGLDLPEVSLVAILDADKEGFLRSGTSLIQTIGRAARNVSGQVHMY
ADRITPAMEKAIEETNRRREKQIAYNKANGIDPQPLRKKINDIVATIAREEVDTEQLLGTGYRQGKDGKAARTPVPSLAA
HAAPAAKSAKGGKAGGAGKGEITSDRPAAELAGIIEEMTDRMRAAAAELQFEVAARLRDEVSELKKELRQMREAGLA

Nucleotide


Download         Length: 2154 bp        

>NTDB_id=854660 V1460_RS25955 WP_338676031.1 5788304..5790457(-) (uvrB) [Streptomyces sp. SCSIO 30461]
ATGCGGCCCGTTACCCAGATCGAACGTTCGATGGCGCCCTTCGAGGTCGTCAGCCCCTACCGGCCCAACGGCGACCAGCC
GACGGCCATCGCCGAGCTGGAGAAGCGCGTCCGAGCAGGTGAGAAGGACATCGTCCTGCTCGGTGCGACCGGCACGGGCA
AGTCCGCCACCACGGCCTGGATGATCGAGAAGCTCCAGCGCCCCACTCTGGTGATGGCGCCGAACAAGACGCTGGCCGCC
CAGCTGGCCAATGAGTTCCGCGAGCTCCTCCCGAACAACGCGGTGGAGTACTTCGTCTCGTACTACGACTACTACCAGCC
GGAGGCCTACGTCCCGCAGTCGGACACGTACATCGAGAAGGACTCCTCGATCAACGAGGAAGTGGAGCGGTTGCGCCACT
CCGCGACGAACTCGCTGCTGACACGCAGGGACGTGGTCGTGGTCGCCTCGGTCTCGTGCATCTACGGCCTCGGCACCCCG
CAGGAGTACGTCGACCGCATGGTGCCGCTGAAGGTCGGCGCGGAGATCGACCGCGACCAGTTGCTGCGCCGCTTCGTGGA
CATCCAGTACACGCGCAACGACCTGGCGTTCACGCGGGGCACCTTCCGGGTCCGCGGCGACACCATCGAGATCTTCCCGG
TCTACGAGGAGCTCGCCGTCCGCATCGAGATGTTCGGCGACGAGATCGAGGCGCTGTCCACACTGCACCCGCTCACCGGC
GAGGTGATCAGCGACGACCACGAGCTGTACGTCTTCCCCGCCAGCCACTATGTCGCCGGCCCCGAGCGCATGGAGAAGGC
GGTCAACGGCATCGAGCGCGAGCTCGAGGAGCGCCTCGCCGAGCTGGACAAGCAGGGCAAGCTGCTGGAGTCGCAGCGCC
TGCGGATGCGCACCACCTACGACATCGAGATGCTGCGCCAGATCGGCAGTTGCTCCGGCGTGGAGAACTACTCGATGCAC
TTCGACGACCGTGAGCCCGGCACCCCGCCCAACACACTCCTCGACTACTTCCCCGAGGACTTCCTGCTGGTCATCGATGA
ATCGCATGTGACGGTCCCGCAGATCGGCGCCATGTACGAGGGCGACGCGTCCCGCAAGCGGACCCTGGTCGACCACGGCT
TCCGGCTGCCGTCGGCCCTGGACAACCGGCCCCTGAAGTGGGAGGAGTTCCAGAAGCGGATCGGGCAGACGGTCTATCTC
TCCGCGACCCCGGGAAGCTACGAGCTGTCCCGCTCCGACGGCTTCGTCGAGCAGATCATCCGCCCCACCGGACTGGTCGA
CCCCGAGGTGGTCGTCAAGTCCACCGAGGGCCAGATCGACGACCTGGTGCACGAGATCCGCAAGCGTACCGACAAGGACG
AGCGCGTACTCGTGACCACCCTCACGAAGAAGATGGCCGAGGACCTCACCGACTACTTCCTGGAGCTGGGCATCAAGGTC
CGCTATCTGCACAGCGACGTCGACACCCTGCGCCGGATCGAGCTGCTGCGCGAGCTGCGGGCGGGTGAGTACGACGTGCT
GGTCGGCATCAACCTGCTCCGTGAGGGACTCGACCTCCCCGAGGTGTCCCTGGTGGCGATCCTCGACGCGGACAAGGAGG
GCTTCCTGCGCTCCGGCACCTCCCTCATCCAGACCATCGGCCGCGCGGCGCGCAACGTGTCCGGCCAGGTCCATATGTAC
GCCGACAGGATCACCCCGGCGATGGAGAAGGCCATCGAGGAGACCAACCGCCGCCGGGAGAAGCAGATCGCGTACAACAA
GGCGAACGGCATCGACCCCCAGCCCCTGCGCAAGAAGATCAACGACATCGTGGCCACCATCGCCCGCGAGGAGGTCGACA
CCGAGCAGCTCCTCGGCACCGGCTACCGCCAGGGCAAGGACGGCAAGGCGGCCAGGACGCCAGTGCCCTCGCTCGCGGCG
CACGCGGCACCTGCCGCCAAGTCGGCGAAGGGCGGCAAGGCCGGAGGGGCCGGGAAGGGCGAGATCACCAGCGACCGTCC
GGCCGCCGAACTGGCCGGAATCATCGAGGAGATGACCGATCGGATGAGGGCCGCCGCGGCGGAGCTCCAGTTCGAGGTGG
CCGCGCGGCTGCGGGACGAGGTCAGCGAACTGAAGAAGGAGCTGCGGCAGATGAGGGAGGCGGGACTGGCCTGA

Domains

Predicted by InterProScan.

Ultra-violet resistance protein B (UvrB)

(559-600)

Type III restriction enzyme, res subunit (ResIII)

(24-134)

UvrB interaction domain (UvrB_inter)

(169-257)

UvrB/uvrC motif (UVR)

(675-707)

Helicase conserved C-terminal domain (Helicase_C)

(441-551)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  uvrB Streptococcus pneumoniae TIGR4

61.96

83.961

0.52
  uvrB Streptococcus pneumoniae R6

61.96

83.961

0.52
  uvrB Streptococcus pneumoniae D39

61.96

83.961

0.52