Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssbB   Type   Machinery gene
Locus tag   QYS54_RS02170 Genome accession   NZ_CP129633
Coordinates   407781..408143 (+) Length   120 a.a.
NCBI ID   WP_028411997.1    Uniprot ID   -
Organism   Priestia aryabhattai strain S2     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 402781..413143
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QYS54_RS02140 (QYS54_02140) - 402969..403970 (+) 1002 WP_013059791.1 rod shape-determining protein -
  QYS54_RS02145 (QYS54_02145) - 404085..404909 (+) 825 WP_099331345.1 flagellar hook-basal body protein -
  QYS54_RS02150 (QYS54_02150) - 404933..405754 (+) 822 WP_099331344.1 flagellar hook-basal body protein -
  QYS54_RS02155 (QYS54_02155) fabZ 405838..406272 (+) 435 WP_013059788.1 3-hydroxyacyl-ACP dehydratase FabZ -
  QYS54_RS02160 (QYS54_02160) - 406601..406723 (-) 123 WP_301860792.1 helix-turn-helix transcriptional regulator -
  QYS54_RS02165 (QYS54_02165) - 407247..407684 (-) 438 WP_099331342.1 YwpF family protein -
  QYS54_RS02170 (QYS54_02170) ssbB 407781..408143 (+) 363 WP_028411997.1 single-stranded DNA-binding protein Machinery gene
  QYS54_RS02175 (QYS54_02175) - 408426..409472 (-) 1047 WP_099331341.1 LysM peptidoglycan-binding domain-containing protein -
  QYS54_RS02180 (QYS54_02180) - 409770..412400 (-) 2631 WP_049166295.1 DEAD/DEAH box helicase -

Sequence

Protein


Download         Length: 120 a.a.        Molecular weight: 13412.09 Da        Isoelectric Point: 7.1647

>NTDB_id=854650 QYS54_RS02170 WP_028411997.1 407781..408143(+) (ssbB) [Priestia aryabhattai strain S2]
MINHIVLVGRLTKKPELRYTHEGIAVSTITLAINRTFRNVEGEYDADFVNITLWRKNAENTAAYCDKGAVVGVVGRVQTR
TFENNLQQRVYMTDVVADAVKFLSGKPSDSSSFGSNQQEE

Nucleotide


Download         Length: 363 bp        

>NTDB_id=854650 QYS54_RS02170 WP_028411997.1 407781..408143(+) (ssbB) [Priestia aryabhattai strain S2]
ATGATTAACCATATTGTTCTTGTAGGAAGACTGACCAAAAAGCCGGAGCTTCGATATACCCATGAAGGGATTGCCGTATC
TACTATTACGTTAGCAATTAATCGAACGTTTCGAAATGTTGAAGGTGAATATGATGCTGATTTTGTCAACATTACTCTGT
GGAGAAAAAATGCAGAAAATACAGCTGCTTACTGTGATAAAGGAGCGGTTGTAGGCGTGGTAGGGCGTGTACAAACGCGC
ACATTTGAAAATAATCTTCAGCAACGAGTATATATGACCGACGTTGTGGCTGATGCGGTTAAATTTTTAAGTGGAAAGCC
ATCTGATTCTTCTTCATTTGGTTCAAATCAACAAGAAGAATAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(2-103)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssbB Bacillus subtilis subsp. subtilis str. 168

57.143

93.333

0.533
  ssb Latilactobacillus sakei subsp. sakei 23K

48.8

100

0.508
  ssbA Bacillus subtilis subsp. subtilis str. 168

57.547

88.333

0.508