Detailed information    

insolico Bioinformatically predicted

Overview

Name   degU   Type   Regulator
Locus tag   BVAD3_RS16970 Genome accession   NZ_AP024501
Coordinates   3494898..3495587 (-) Length   229 a.a.
NCBI ID   WP_003219701.1    Uniprot ID   G4P1D5
Organism   Bacillus velezensis strain AD-3     
Function   activation of comK (predicted from homology)   
Competence regulation

Genomic Context

Location: 3489898..3500587
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  BVAD3_RS16935 (BVAD3_33600) - 3490097..3490579 (-) 483 WP_003151394.1 flagellar protein FlgN -
  BVAD3_RS16940 (BVAD3_33610) flgM 3490594..3490860 (-) 267 WP_003151393.1 flagellar biosynthesis anti-sigma factor FlgM -
  BVAD3_RS16945 (BVAD3_33620) - 3490930..3491348 (-) 419 Protein_3302 TIGR03826 family flagellar region protein -
  BVAD3_RS16950 comFC 3491422..3492111 (-) 690 WP_199449054.1 ComF family protein Machinery gene
  BVAD3_RS16955 (BVAD3_33640) - 3492117..3492401 (-) 285 WP_003151389.1 competence protein ComFB -
  BVAD3_RS16960 (BVAD3_33650) comFA 3492459..3493844 (-) 1386 WP_029972824.1 DEAD/DEAH box helicase Machinery gene
  BVAD3_RS16965 (BVAD3_33660) - 3493952..3494800 (-) 849 WP_003151387.1 DegV family protein -
  BVAD3_RS16970 (BVAD3_33670) degU 3494898..3495587 (-) 690 WP_003219701.1 two-component system response regulator DegU Regulator
  BVAD3_RS16975 (BVAD3_33680) degS 3495664..3496827 (-) 1164 WP_207169021.1 two-component sensor histidine kinase DegS Regulator
  BVAD3_RS16980 (BVAD3_33690) - 3497050..3497697 (+) 648 WP_007614107.1 YigZ family protein -
  BVAD3_RS16985 (BVAD3_33700) - 3497702..3498916 (+) 1215 WP_014419013.1 LCP family protein -
  BVAD3_RS16990 (BVAD3_33710) - 3499006..3500082 (-) 1077 WP_003151382.1 MraY family glycosyltransferase -

Sequence

Protein


Download         Length: 229 a.a.        Molecular weight: 25866.57 Da        Isoelectric Point: 5.9446

>NTDB_id=85460 BVAD3_RS16970 WP_003219701.1 3494898..3495587(-) (degU) [Bacillus velezensis strain AD-3]
MTKVNIVIIDDHQLFREGVKRILDFEPTFEVVAEGDDGDEAARIVEHYHPDVVIMDINMPNVNGVEATKQLVELYPESKV
IILSIHDDENYVTHALKTGARGYLLKEMDADTLIEAVKVVAEGGSYLHPKVTHNLVNEFRRLATSGVSAHPQHEVYPEIR
RPLHILTRRECEVLQMLADGKSNRGIGESLFISEKTVKNHVSNILQKMNVNDRTQAVVVAIKNGWVEMR

Nucleotide


Download         Length: 690 bp        

>NTDB_id=85460 BVAD3_RS16970 WP_003219701.1 3494898..3495587(-) (degU) [Bacillus velezensis strain AD-3]
GTGACTAAAGTAAATATTGTTATTATCGACGACCATCAACTATTCCGTGAGGGTGTAAAAAGAATATTGGATTTTGAACC
TACCTTTGAAGTGGTAGCAGAAGGTGACGATGGAGATGAGGCGGCTCGAATCGTCGAGCATTATCATCCCGATGTTGTCA
TAATGGACATCAATATGCCGAATGTAAATGGAGTAGAGGCTACTAAACAGCTTGTTGAGCTGTACCCTGAATCTAAGGTG
ATTATCCTCTCCATCCATGATGATGAAAACTATGTGACTCATGCTTTAAAAACAGGTGCAAGAGGCTATCTCCTGAAAGA
GATGGACGCAGATACTTTAATCGAAGCAGTGAAAGTGGTAGCCGAGGGAGGTTCTTACCTTCACCCGAAAGTAACCCACA
ATCTTGTCAACGAATTCCGCCGTCTTGCGACAAGCGGAGTTTCTGCTCATCCTCAGCATGAGGTTTACCCGGAAATCCGG
AGACCATTACATATATTAACGAGACGGGAATGTGAAGTGCTGCAAATGCTTGCAGACGGAAAAAGCAACCGCGGAATCGG
TGAATCATTGTTTATCAGTGAGAAAACAGTGAAAAATCACGTGAGTAATATTTTGCAGAAAATGAACGTTAATGACCGGA
CACAAGCCGTTGTCGTAGCCATTAAAAACGGCTGGGTAGAGATGCGTTAG

Domains

Predicted by InterproScan.

Bacterial regulatory proteins, luxR family (GerE)

(165-220)

Response regulator receiver domain (Response_reg)

(6-118)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB G4P1D5

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  degU Bacillus subtilis subsp. subtilis str. 168

100

100

1

Multiple sequence alignment