Detailed information    

insolico Bioinformatically predicted

Overview

Name   comFA   Type   Machinery gene
Locus tag   BVAD3_RS16960 Genome accession   NZ_AP024501
Coordinates   3492459..3493844 (-) Length   461 a.a.
NCBI ID   WP_029972824.1    Uniprot ID   A0AAP4DHF4
Organism   Bacillus velezensis strain AD-3     
Function   ssDNA transport into the cell (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 3487459..3498844
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  BVAD3_RS16925 (BVAD3_33580) flgL 3487635..3488552 (-) 918 WP_007407477.1 flagellar hook-associated protein FlgL -
  BVAD3_RS16930 (BVAD3_33590) flgK 3488564..3490081 (-) 1518 WP_014419008.1 flagellar hook-associated protein FlgK -
  BVAD3_RS16935 (BVAD3_33600) - 3490097..3490579 (-) 483 WP_003151394.1 flagellar protein FlgN -
  BVAD3_RS16940 (BVAD3_33610) flgM 3490594..3490860 (-) 267 WP_003151393.1 flagellar biosynthesis anti-sigma factor FlgM -
  BVAD3_RS16945 (BVAD3_33620) - 3490930..3491348 (-) 419 Protein_3302 TIGR03826 family flagellar region protein -
  BVAD3_RS16950 comFC 3491422..3492111 (-) 690 WP_199449054.1 ComF family protein Machinery gene
  BVAD3_RS16955 (BVAD3_33640) - 3492117..3492401 (-) 285 WP_003151389.1 competence protein ComFB -
  BVAD3_RS16960 (BVAD3_33650) comFA 3492459..3493844 (-) 1386 WP_029972824.1 DEAD/DEAH box helicase Machinery gene
  BVAD3_RS16965 (BVAD3_33660) - 3493952..3494800 (-) 849 WP_003151387.1 DegV family protein -
  BVAD3_RS16970 (BVAD3_33670) degU 3494898..3495587 (-) 690 WP_003219701.1 two-component system response regulator DegU Regulator
  BVAD3_RS16975 (BVAD3_33680) degS 3495664..3496827 (-) 1164 WP_207169021.1 two-component sensor histidine kinase DegS Regulator
  BVAD3_RS16980 (BVAD3_33690) - 3497050..3497697 (+) 648 WP_007614107.1 YigZ family protein -

Sequence

Protein


Download         Length: 461 a.a.        Molecular weight: 52662.09 Da        Isoelectric Point: 10.2802

>NTDB_id=85459 BVAD3_RS16960 WP_029972824.1 3492459..3493844(-) (comFA) [Bacillus velezensis strain AD-3]
MSEGDSEFSEVRDFFYGRRLLRSEIPFSDQRIKRLTEKEYITAEPSIIRRKNRYVCQRCGQSDQASFAAFWAPSAKRQIT
YCRACVMMGRADELTSLYSWNQAPENSWEPVKLSWEGTLTDGQKRAAAALTDAIKERQELLVWAVCGSGKTEMLFPGIEF
ALNHGLRVCVATPRTDVVLELLPRLNKAFEKVEVSALYGGSEDKGRLTPLMISTAHQLMRYRDIFDVMIIDEVDAFPFSA
DETLRFAVDKARKKNSALVYVTATPSDTLKKKAEAGLLKSVRIPARYHRKPLPEPRFLWCGNWKKKLQKGKLPRSVTDWV
RQKLQLQLPVFLFVPSVHVLKKTTDYFRKLNIRAEGVHAEDTFRKDKVKRFRDGRLDLLVTTTILERGVTVPKVQTCVLG
AEAPIFTESALVQIAGRTGRHYKHFSGDVVMFHFGITNGMKKAKKHIEHMNKLAQKSKLLD

Nucleotide


Download         Length: 1386 bp        

>NTDB_id=85459 BVAD3_RS16960 WP_029972824.1 3492459..3493844(-) (comFA) [Bacillus velezensis strain AD-3]
ATGTCCGAAGGTGATTCAGAATTTTCAGAGGTGCGGGATTTCTTTTACGGCCGGCGTTTATTGAGATCTGAGATACCGTT
TTCAGACCAGCGCATCAAGCGTTTAACAGAAAAAGAATATATAACGGCCGAGCCGTCAATCATCCGCCGGAAAAACCGTT
ACGTCTGCCAACGATGCGGTCAGTCTGATCAAGCCAGCTTTGCGGCATTTTGGGCGCCCTCTGCCAAAAGGCAGATTACC
TATTGCCGTGCCTGTGTCATGATGGGAAGGGCTGATGAACTGACATCATTATATTCTTGGAATCAAGCCCCTGAAAACAG
CTGGGAGCCTGTAAAGCTTTCTTGGGAAGGAACACTGACAGACGGACAGAAGCGGGCGGCCGCCGCGCTTACAGATGCGA
TAAAAGAGAGACAAGAGCTTTTAGTATGGGCGGTTTGCGGATCGGGGAAAACAGAGATGCTGTTTCCGGGTATCGAGTTT
GCGCTGAATCACGGTTTGCGCGTTTGTGTCGCAACTCCGCGTACAGATGTCGTACTTGAACTGCTGCCGAGACTGAATAA
AGCATTTGAGAAAGTCGAAGTTTCTGCTTTGTACGGCGGCAGCGAGGACAAAGGCCGCTTGACTCCGCTGATGATTTCAA
CCGCTCACCAGCTGATGCGCTACCGAGACATTTTTGATGTCATGATAATAGATGAAGTAGATGCGTTTCCTTTTTCAGCC
GATGAGACATTAAGATTCGCTGTTGATAAAGCGAGGAAGAAAAACAGCGCCCTTGTTTATGTAACGGCGACTCCTTCAGA
CACATTAAAAAAGAAGGCTGAAGCCGGTTTGCTGAAAAGCGTCCGCATACCGGCCAGATATCATCGGAAACCCCTCCCGG
AGCCGCGTTTTTTGTGGTGCGGCAATTGGAAGAAGAAGCTTCAGAAAGGAAAACTGCCGCGCTCTGTAACGGATTGGGTC
CGCCAAAAACTTCAATTACAGCTGCCGGTTTTCTTATTCGTCCCGTCTGTACACGTATTGAAAAAGACAACGGATTATTT
TCGGAAATTAAACATACGGGCAGAAGGCGTACATGCGGAAGACACATTCAGAAAGGATAAAGTGAAACGATTCAGAGACG
GCCGGCTTGACCTGCTGGTAACGACTACGATTTTAGAAAGAGGGGTTACCGTGCCCAAAGTTCAGACATGTGTCCTCGGC
GCAGAAGCACCTATCTTTACTGAGAGCGCGCTCGTACAGATCGCGGGCAGAACGGGAAGGCATTATAAACATTTCAGCGG
TGATGTCGTCATGTTTCATTTCGGAATTACAAACGGAATGAAAAAAGCAAAAAAACATATAGAACATATGAACAAATTGG
CACAAAAAAGTAAATTGTTGGACTAG

Domains

Predicted by InterproScan.

Type III restriction enzyme, res subunit (ResIII)

(118-266)

Helicase conserved C-terminal domain (Helicase_C)

(330-421)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comFA Bacillus subtilis subsp. subtilis str. 168

62.174

99.783

0.62

Multiple sequence alignment