Detailed information    

insolico Bioinformatically predicted

Overview

Name   uvrB   Type   Machinery gene
Locus tag   V2W30_RS09865 Genome accession   NZ_CP146022
Coordinates   2108076..2110211 (-) Length   711 a.a.
NCBI ID   WP_338695420.1    Uniprot ID   A0ACD5A8T4
Organism   Streptomyces sp. Q6     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 2103076..2115211
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  V2W30_RS09845 (V2W30_09845) - 2103796..2104104 (-) 309 WP_338695416.1 hypothetical protein -
  V2W30_RS09850 (V2W30_09850) - 2104236..2105225 (-) 990 WP_338695418.1 TerC family protein -
  V2W30_RS09855 (V2W30_09855) - 2105460..2107333 (-) 1874 Protein_1954 TerD family protein -
  V2W30_RS09860 (V2W30_09860) - 2107344..2107922 (-) 579 WP_338695419.1 TerD family protein -
  V2W30_RS09865 (V2W30_09865) uvrB 2108076..2110211 (-) 2136 WP_338695420.1 excinuclease ABC subunit UvrB Machinery gene
  V2W30_RS09870 (V2W30_09870) - 2110286..2111140 (-) 855 WP_338695421.1 MHYT domain-containing protein -
  V2W30_RS09875 (V2W30_09875) - 2111411..2112286 (+) 876 WP_338695422.1 glycerophosphodiester phosphodiesterase family protein -
  V2W30_RS09880 (V2W30_09880) - 2112331..2112891 (+) 561 WP_338695423.1 methylated-DNA--[protein]-cysteine S-methyltransferase -
  V2W30_RS09885 (V2W30_09885) - 2112940..2114222 (+) 1283 Protein_1960 MFS transporter -
  V2W30_RS09890 (V2W30_09890) - 2114236..2114613 (-) 378 WP_338695424.1 cupin domain-containing protein -
  V2W30_RS09895 (V2W30_09895) - 2114751..2115005 (+) 255 WP_338695426.1 GlsB/YeaQ/YmgE family stress response membrane protein -

Sequence

Protein


Download         Length: 711 a.a.        Molecular weight: 80170.91 Da        Isoelectric Point: 4.7681

>NTDB_id=854561 V2W30_RS09865 WP_338695420.1 2108076..2110211(-) (uvrB) [Streptomyces sp. Q6]
MRPVSKIERTVAPFEVVSPYQPSGDQPAAIAELEKRIKAGEKDVVLLGATGTGKSATTAWMIEKLQRPTLVMAPNKTLAA
QLANEFRELLPNNAVEYFVSYYDYYQPEAYVPQSDTYIEKDSSINEEVERLRHSATNSLLTRRDVVVVASVSCIYGLGTP
QEYVDRMVSLKVGEEIDRDDLLRRFVDIQYTRNDVAFQRGTFRVRGDTIEIFPVYEELAVRIEMFGDEIEALSTLHPLTG
EVISDDESLYIFPATHYVAGPERLERAVNDIEKELGERLATLEKQGKMLEAQRLRMRTTYDIEMLRQIGSCSGVENYSMH
FDGREPGSPPNTLLDYFPDDFMLVIDESHVTVPQIGAMYEGDASRKRTLVDHGFRLPSALDNRPLKWEEFQERIGQTVYL
SATPGKYELARSDGYVEQIIRPTGLIDPEVVVKPTEGQIDDLVHEIRTRTEKDERVLVTTLTKKMAEDLTDYFLELGIQV
RYLHSDVDTLRRVELLRELRAGEYDVLVGINLLREGLDLPEVSLVAILDADKEGFLRSGTSLIQTIGRAARNVSGQVHMY
ADKITPAMEKAIEETNRRREKQIAYNEERGIDPQPLRKKINDIVASIAREDVDTEELLGTGYRKGGKDGKGAKAPVPSLG
KADTGKKKRGKAAETVPTDRPAAELAEQIEEMTERMRAAAADLQFEIAARLRDEVSEMKKELRQMKEAGIA

Nucleotide


Download         Length: 2136 bp        

>NTDB_id=854561 V2W30_RS09865 WP_338695420.1 2108076..2110211(-) (uvrB) [Streptomyces sp. Q6]
ATGCGGCCCGTATCCAAGATCGAACGCACGGTGGCGCCTTTCGAGGTCGTCAGCCCGTACCAGCCCAGCGGTGACCAGCC
CGCGGCCATCGCCGAGCTGGAGAAGCGCATCAAGGCAGGCGAGAAGGACGTCGTCCTGCTCGGCGCCACCGGCACCGGCA
AGTCCGCCACCACGGCGTGGATGATCGAGAAGCTCCAGCGGCCCACCCTCGTGATGGCGCCGAACAAGACGCTGGCCGCG
CAGCTGGCGAACGAGTTCCGGGAGCTCCTGCCGAACAACGCGGTCGAGTACTTCGTCTCGTACTACGACTACTACCAACC
CGAGGCGTACGTTCCGCAGTCGGACACGTACATCGAGAAGGACTCCTCGATCAACGAGGAGGTGGAGCGCCTGCGCCACT
CCGCGACGAACTCGCTGCTGACCCGCCGCGACGTCGTGGTGGTCGCCTCCGTGTCCTGCATCTACGGCCTCGGCACGCCG
CAGGAGTACGTGGACCGCATGGTCTCCCTGAAGGTCGGCGAGGAGATCGACCGCGACGACCTGCTGCGCCGCTTCGTCGA
CATCCAGTACACGCGCAACGACGTGGCGTTCCAGCGCGGCACCTTCCGGGTGCGCGGCGACACCATCGAGATCTTCCCGG
TCTACGAGGAGCTCGCGGTCCGGATCGAGATGTTCGGCGACGAGATCGAGGCCCTCTCGACGCTCCACCCCCTCACCGGC
GAGGTCATCAGCGACGACGAGTCGCTGTACATCTTCCCTGCCACGCACTACGTGGCGGGCCCCGAGCGCCTGGAGCGCGC
GGTCAACGACATCGAGAAGGAGCTGGGCGAGCGCCTCGCCACCCTGGAGAAGCAGGGCAAGATGCTCGAGGCCCAGCGGC
TGCGCATGCGCACCACGTACGACATCGAGATGCTCCGCCAGATCGGCTCCTGCTCCGGCGTGGAGAACTACTCGATGCAC
TTCGACGGCCGCGAGCCCGGCTCCCCGCCGAACACGCTGCTCGACTACTTCCCGGACGACTTCATGCTCGTCATCGACGA
GTCGCACGTCACCGTCCCGCAGATCGGCGCCATGTACGAGGGCGACGCCTCCCGCAAGCGCACCCTCGTGGACCACGGCT
TCCGGCTGCCCTCCGCGCTCGACAACCGCCCGCTGAAGTGGGAGGAGTTCCAGGAGCGCATCGGCCAGACCGTCTACCTG
TCGGCGACCCCGGGCAAGTACGAGCTCGCCCGCTCGGACGGCTACGTGGAGCAGATCATCCGCCCCACCGGCCTGATCGA
CCCGGAGGTCGTCGTCAAGCCGACCGAGGGGCAGATCGACGACCTGGTGCACGAGATCCGCACGCGCACGGAGAAGGACG
AGCGCGTCCTGGTCACCACGCTCACCAAGAAGATGGCCGAGGACCTCACGGACTACTTCCTGGAGCTCGGCATCCAGGTG
CGCTACCTCCACAGCGACGTCGACACCCTGCGCCGGGTGGAGCTCCTGCGGGAGCTGCGCGCGGGCGAGTACGACGTCCT
GGTCGGCATCAACCTGCTCCGTGAGGGCCTCGACCTGCCCGAGGTCTCCCTGGTCGCGATCCTCGACGCCGACAAGGAGG
GCTTCCTGCGCTCCGGTACGTCGCTGATCCAGACCATCGGCCGTGCGGCTCGTAACGTGTCGGGCCAGGTGCACATGTAC
GCCGACAAGATCACCCCGGCGATGGAGAAGGCCATTGAGGAGACCAATCGCCGCCGGGAGAAGCAGATCGCGTACAACGA
GGAGCGGGGCATCGACCCCCAGCCCCTCCGGAAGAAGATCAACGACATCGTCGCGTCCATCGCGCGCGAGGACGTCGACA
CGGAGGAGCTGCTCGGCACGGGGTACCGCAAGGGCGGAAAGGACGGCAAGGGTGCCAAGGCCCCCGTGCCGTCCCTCGGC
AAGGCGGACACCGGCAAGAAGAAGCGCGGCAAGGCGGCGGAGACCGTCCCCACCGACCGCCCCGCGGCCGAACTCGCCGA
GCAGATCGAGGAGATGACCGAGCGGATGCGGGCCGCGGCCGCCGACCTGCAGTTCGAGATCGCGGCGCGGCTGCGCGACG
AGGTGTCGGAGATGAAGAAGGAGCTGCGCCAGATGAAGGAGGCAGGCATCGCCTGA

Domains

Predicted by InterProScan.

UvrB/uvrC motif (UVR)

(667-700)

UvrB interaction domain (UvrB_inter)

(168-257)

Ultra-violet resistance protein B (UvrB)

(559-600)

Type III restriction enzyme, res subunit (ResIII)

(25-134)

Helicase conserved C-terminal domain (Helicase_C)

(441-551)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  uvrB Streptococcus pneumoniae TIGR4

57.681

97.046

0.56
  uvrB Streptococcus pneumoniae R6

57.681

97.046

0.56
  uvrB Streptococcus pneumoniae D39

57.681

97.046

0.56