Detailed information    

insolico Bioinformatically predicted

Overview

Name   sinR   Type   Regulator
Locus tag   BVAD3_RS12050 Genome accession   NZ_AP024501
Coordinates   2523077..2523412 (+) Length   111 a.a.
NCBI ID   WP_003153104.1    Uniprot ID   -
Organism   Bacillus velezensis strain AD-3     
Function   repression of rok; repression of degU; repression of spo0A (predicted from homology)   
Competence regulation

Genomic Context

Location: 2518077..2528412
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  BVAD3_RS12030 (BVAD3_23920) gcvT 2518683..2519783 (-) 1101 WP_017418134.1 glycine cleavage system aminomethyltransferase GcvT -
  BVAD3_RS12035 (BVAD3_23930) - 2520207..2521877 (+) 1671 WP_021494309.1 SNF2-related protein -
  BVAD3_RS12040 (BVAD3_23940) - 2521899..2522693 (+) 795 WP_014418368.1 YqhG family protein -
  BVAD3_RS12045 (BVAD3_23950) sinI 2522870..2523043 (+) 174 WP_014418369.1 anti-repressor SinI family protein Regulator
  BVAD3_RS12050 (BVAD3_23960) sinR 2523077..2523412 (+) 336 WP_003153104.1 transcriptional regulator SinR Regulator
  BVAD3_RS12055 (BVAD3_23970) - 2523460..2524245 (-) 786 WP_007408329.1 TasA family protein -
  BVAD3_RS12060 (BVAD3_23980) - 2524310..2524894 (-) 585 WP_012117977.1 signal peptidase I -
  BVAD3_RS12065 (BVAD3_23990) tapA 2524866..2525537 (-) 672 WP_014418371.1 amyloid fiber anchoring/assembly protein TapA -
  BVAD3_RS12070 (BVAD3_24000) - 2525796..2526125 (+) 330 WP_012117979.1 DUF3889 domain-containing protein -
  BVAD3_RS12075 (BVAD3_24010) - 2526166..2526345 (-) 180 WP_003153093.1 YqzE family protein -
  BVAD3_RS12080 (BVAD3_24020) comGG 2526402..2526779 (-) 378 WP_017418138.1 competence type IV pilus minor pilin ComGG Machinery gene
  BVAD3_RS12085 (BVAD3_24030) comGF 2526780..2527175 (-) 396 WP_025649850.1 competence type IV pilus minor pilin ComGF -
  BVAD3_RS12090 (BVAD3_24040) comGE 2527189..2527503 (-) 315 WP_017418140.1 competence type IV pilus minor pilin ComGE Machinery gene
  BVAD3_RS12095 (BVAD3_24050) comGD 2527487..2527924 (-) 438 WP_095061019.1 competence type IV pilus minor pilin ComGD Machinery gene
  BVAD3_RS12100 (BVAD3_24060) comGC 2527914..2528222 (-) 309 WP_014418376.1 competence type IV pilus major pilin ComGC Machinery gene

Sequence

Protein


Download         Length: 111 a.a.        Molecular weight: 12972.64 Da        Isoelectric Point: 7.2023

>NTDB_id=85435 BVAD3_RS12050 WP_003153104.1 2523077..2523412(+) (sinR) [Bacillus velezensis strain AD-3]
MIGQRIKQYRKEKGYSLSELAEKAGVAKSYLSSIERNLQTNPSIQFLEKVSAVLDVSVHTLLDEKHETEYDGQLDSEWEK
LVRDAMTSGVSKKQFREFLDYQKWRKAQKEE

Nucleotide


Download         Length: 336 bp        

>NTDB_id=85435 BVAD3_RS12050 WP_003153104.1 2523077..2523412(+) (sinR) [Bacillus velezensis strain AD-3]
TTGATTGGCCAGCGTATTAAACAATACCGAAAAGAAAAAGGCTACTCACTATCAGAACTAGCTGAAAAAGCTGGGGTAGC
GAAGTCTTATTTAAGCTCAATAGAACGAAATTTACAGACGAACCCCTCCATTCAATTTCTCGAAAAAGTCTCCGCTGTTC
TGGACGTCTCGGTTCATACTTTACTTGATGAAAAACATGAAACCGAATACGATGGTCAATTAGATAGTGAATGGGAGAAA
TTAGTTCGCGATGCAATGACATCCGGGGTATCAAAAAAACAATTTCGTGAATTTTTAGATTATCAAAAATGGAGAAAAGC
GCAAAAAGAGGAGTAG

Domains

Predicted by InterproScan.

Helix-turn-helix (HTH_3)

(6-58)

Anti-repressor SinI (SinI)

(74-101)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sinR Bacillus subtilis subsp. subtilis str. 168

99.099

100

0.991

Multiple sequence alignment