Detailed information    

insolico Bioinformatically predicted

Overview

Name   comGF   Type   Machinery gene
Locus tag   QYT28_RS05025 Genome accession   NZ_CP129556
Coordinates   1057917..1058414 (-) Length   165 a.a.
NCBI ID   WP_001794328.1    Uniprot ID   -
Organism   Staphylococcus aureus strain 137G     
Function   dsDNA binding to the cell surface; assembly of the pseudopilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1052917..1063414
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QYT28_RS05000 (QYT28_05000) gcvPB 1053079..1054551 (-) 1473 WP_000202178.1 aminomethyl-transferring glycine dehydrogenase subunit GcvPB -
  QYT28_RS05005 (QYT28_05005) gcvPA 1054544..1055890 (-) 1347 WP_000019697.1 aminomethyl-transferring glycine dehydrogenase subunit GcvPA -
  QYT28_RS05010 (QYT28_05010) gcvT 1055910..1057001 (-) 1092 WP_123089974.1 glycine cleavage system aminomethyltransferase GcvT -
  QYT28_RS05015 (QYT28_05015) - 1057160..1057684 (-) 525 WP_001015125.1 shikimate kinase -
  QYT28_RS05020 (QYT28_05020) - 1057674..1057820 (-) 147 WP_001789879.1 hypothetical protein -
  QYT28_RS05025 (QYT28_05025) comGF 1057917..1058414 (-) 498 WP_001794328.1 competence type IV pilus minor pilin ComGF Machinery gene
  QYT28_RS05030 (QYT28_05030) comGE 1058332..1058631 (-) 300 WP_000844413.1 hypothetical protein Machinery gene
  QYT28_RS05035 (QYT28_05035) comGD 1058618..1059064 (-) 447 WP_001791207.1 competence type IV pilus minor pilin ComGD Machinery gene
  QYT28_RS05040 (QYT28_05040) comGC 1059042..1059353 (-) 312 WP_000472257.1 competence type IV pilus major pilin ComGC Machinery gene
  QYT28_RS05045 (QYT28_05045) comGB 1059346..1060437 (-) 1092 WP_123089976.1 competence type IV pilus assembly protein ComGB Machinery gene
  QYT28_RS05050 (QYT28_05050) comGA 1060409..1061383 (-) 975 WP_000697220.1 competence type IV pilus ATPase ComGA Machinery gene
  QYT28_RS05055 (QYT28_05055) - 1061435..1062058 (-) 624 WP_001223008.1 MBL fold metallo-hydrolase -
  QYT28_RS05060 (QYT28_05060) - 1062055..1062384 (-) 330 WP_001018871.1 MTH1187 family thiamine-binding protein -
  QYT28_RS05065 (QYT28_05065) - 1062384..1063370 (-) 987 WP_000161314.1 ROK family glucokinase -

Sequence

Protein


Download         Length: 165 a.a.        Molecular weight: 19197.95 Da        Isoelectric Point: 10.2192

>NTDB_id=854295 QYT28_RS05025 WP_001794328.1 1057917..1058414(-) (comGF) [Staphylococcus aureus strain 137G]
MILSKVTNKFVLFQKIPLLIKRHVYSINVKAFSLIEMLVAMMVISITLLIVPDLIRLSKTFLIESRELTTVDFEFFSRDI
LEDFKGVDRNDIEIRQQRIILHKGEEMIEYKLINNKIIKVVNDRGNITMINNVTAFTANIYYKSIIKITITVKVGTNLQT
KTIYV

Nucleotide


Download         Length: 498 bp        

>NTDB_id=854295 QYT28_RS05025 WP_001794328.1 1057917..1058414(-) (comGF) [Staphylococcus aureus strain 137G]
ATGATATTAAGCAAAGTGACCAACAAATTTGTGCTATTTCAAAAAATACCACTTCTTATCAAAAGACATGTATACAGTAT
TAATGTCAAAGCTTTTTCGCTAATTGAAATGTTAGTAGCGATGATGGTTATAAGTATAACTTTACTAATTGTTCCAGACT
TAATTAGACTTAGCAAAACTTTTCTAATTGAAAGTAGGGAATTAACAACTGTAGATTTCGAATTTTTCTCAAGAGATATT
CTAGAGGATTTTAAAGGTGTAGATAGAAACGATATTGAAATTAGGCAACAGCGTATCATTTTACATAAAGGTGAAGAAAT
GATCGAATACAAATTAATAAATAATAAAATTATTAAAGTTGTAAATGACAGAGGAAATATAACAATGATTAATAATGTTA
CAGCATTTACTGCAAATATCTACTATAAATCTATTATTAAAATAACGATAACAGTTAAAGTCGGTACAAATCTGCAGACT
AAAACAATTTATGTATAA

Domains

Predicted by InterproScan.

Prokaryotic N-terminal methylation motif (N_methyl)

(28-51)

Putative Competence protein ComGF (ComGF)

(68-155)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comGF Staphylococcus aureus N315

98.788

100

0.988
  comGF Staphylococcus aureus MW2

97.576

100

0.976