Detailed information    

insolico Bioinformatically predicted

Overview

Name   comGA   Type   Machinery gene
Locus tag   QYT28_RS05050 Genome accession   NZ_CP129556
Coordinates   1060409..1061383 (-) Length   324 a.a.
NCBI ID   WP_000697220.1    Uniprot ID   W8U5L8
Organism   Staphylococcus aureus strain 137G     
Function   dsDNA binding to the cell surface; assembly of the pseudopilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1055409..1066383
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QYT28_RS05010 (QYT28_05010) gcvT 1055910..1057001 (-) 1092 WP_123089974.1 glycine cleavage system aminomethyltransferase GcvT -
  QYT28_RS05015 (QYT28_05015) - 1057160..1057684 (-) 525 WP_001015125.1 shikimate kinase -
  QYT28_RS05020 (QYT28_05020) - 1057674..1057820 (-) 147 WP_001789879.1 hypothetical protein -
  QYT28_RS05025 (QYT28_05025) comGF 1057917..1058414 (-) 498 WP_001794328.1 competence type IV pilus minor pilin ComGF Machinery gene
  QYT28_RS05030 (QYT28_05030) comGE 1058332..1058631 (-) 300 WP_000844413.1 hypothetical protein Machinery gene
  QYT28_RS05035 (QYT28_05035) comGD 1058618..1059064 (-) 447 WP_001791207.1 competence type IV pilus minor pilin ComGD Machinery gene
  QYT28_RS05040 (QYT28_05040) comGC 1059042..1059353 (-) 312 WP_000472257.1 competence type IV pilus major pilin ComGC Machinery gene
  QYT28_RS05045 (QYT28_05045) comGB 1059346..1060437 (-) 1092 WP_123089976.1 competence type IV pilus assembly protein ComGB Machinery gene
  QYT28_RS05050 (QYT28_05050) comGA 1060409..1061383 (-) 975 WP_000697220.1 competence type IV pilus ATPase ComGA Machinery gene
  QYT28_RS05055 (QYT28_05055) - 1061435..1062058 (-) 624 WP_001223008.1 MBL fold metallo-hydrolase -
  QYT28_RS05060 (QYT28_05060) - 1062055..1062384 (-) 330 WP_001018871.1 MTH1187 family thiamine-binding protein -
  QYT28_RS05065 (QYT28_05065) - 1062384..1063370 (-) 987 WP_000161314.1 ROK family glucokinase -
  QYT28_RS05070 (QYT28_05070) - 1063367..1063570 (-) 204 WP_000087561.1 YqgQ family protein -
  QYT28_RS05075 (QYT28_05075) - 1063551..1065014 (-) 1464 WP_001017873.1 rhomboid family protein -
  QYT28_RS05080 (QYT28_05080) - 1065026..1065565 (-) 540 WP_000164553.1 5-formyltetrahydrofolate cyclo-ligase -
  QYT28_RS05085 (QYT28_05085) rpmG 1065774..1065923 (-) 150 WP_001265709.1 50S ribosomal protein L33 -

Sequence

Protein


Download         Length: 324 a.a.        Molecular weight: 36897.96 Da        Isoelectric Point: 8.8516

>NTDB_id=854300 QYT28_RS05050 WP_000697220.1 1060409..1061383(-) (comGA) [Staphylococcus aureus strain 137G]
MKILFQEIINKAIEMKASDVHFIPVKNEVSIKFRINDNLEQYEQIGNSIYQKLLVYMKFQAGLDVSTQQVAQSGRYSYHF
NKIYFLRISTLPLSLGQESCVIRIVPQFFQQQKSTYKFNDFKHLMNKKQGLLLFSGPTGSGKSTLMYQMVSYANKALNLN
VISIEDPVEMQIPGIVQINVNDKAGINYVNSFKAILRCDPDVILIGEIRDKDVAKCVIQASLSGHLVLTTLHATDCKGAI
LRLLEMGISVQELIQATNLIINQRLVTTIKQQRQLVCEILSQQQLRYFFSHNHSLPSSFKNLEDKLDDMTKAGVICETTM
DKYI

Nucleotide


Download         Length: 975 bp        

>NTDB_id=854300 QYT28_RS05050 WP_000697220.1 1060409..1061383(-) (comGA) [Staphylococcus aureus strain 137G]
TTGAAGATTCTATTTCAAGAAATAATTAATAAAGCGATAGAAATGAAAGCGAGTGATGTACATTTTATTCCAGTTAAAAA
TGAAGTAAGTATTAAATTTAGAATTAATGATAACTTGGAGCAGTATGAACAAATTGGGAATAGCATTTATCAAAAGTTAT
TAGTTTATATGAAGTTTCAAGCTGGGCTTGATGTTTCTACACAGCAAGTCGCACAGAGCGGTCGATATAGTTACCATTTC
AATAAAATATATTTTTTGAGAATATCAACTTTACCATTGTCACTTGGCCAAGAAAGTTGTGTTATCAGAATTGTACCTCA
ATTTTTTCAACAACAGAAATCAACTTATAAATTCAATGATTTTAAACACCTCATGAATAAGAAACAAGGATTACTATTGT
TTAGTGGGCCAACTGGTTCAGGAAAGAGTACATTAATGTATCAAATGGTCTCATACGCGAATAAAGCCTTGAATTTAAAT
GTAATTTCTATAGAGGATCCTGTAGAGATGCAAATTCCTGGTATCGTGCAAATTAATGTGAATGATAAAGCTGGCATTAA
CTATGTAAATTCGTTTAAAGCTATTTTAAGATGTGATCCTGATGTTATTTTAATAGGTGAAATCAGAGATAAAGATGTTG
CCAAGTGTGTTATACAGGCTAGTTTAAGTGGTCACCTTGTTCTGACTACATTGCATGCAACTGATTGTAAAGGTGCTATT
TTAAGGCTATTAGAAATGGGCATTTCTGTACAAGAATTGATACAGGCAACTAACTTAATTATAAACCAACGACTTGTAAC
TACTATTAAGCAACAGCGACAATTAGTATGTGAAATTCTATCTCAGCAACAACTCCGATATTTCTTTTCCCATAATCATT
CATTACCATCATCATTTAAGAACTTAGAAGATAAACTTGATGATATGACAAAAGCAGGTGTCATTTGTGAAACTACAATG
GATAAATACATTTAA

Domains

Predicted by InterproScan.

Type II/IV secretion system protein (T2SSE)

(7-267)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB W8U5L8

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comGA Staphylococcus aureus MW2

100

100

1
  comGA Staphylococcus aureus N315

100

100

1