Detailed information    

insolico Bioinformatically predicted

Overview

Name   comFA   Type   Machinery gene
Locus tag   QY867_RS08555 Genome accession   NZ_CP129529
Coordinates   1680412..1681749 (-) Length   445 a.a.
NCBI ID   WP_099947263.1    Uniprot ID   -
Organism   Latilactobacillus sakei strain A1291     
Function   ssDNA transport into the cell (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1675412..1686749
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QY867_RS08540 (QY867_08525) secA 1676457..1678820 (-) 2364 WP_011374203.1 preprotein translocase subunit SecA -
  QY867_RS08545 (QY867_08530) raiA 1679069..1679614 (-) 546 WP_056948836.1 ribosome-associated translation inhibitor RaiA -
  QY867_RS08550 (QY867_08535) comFC 1679741..1680436 (-) 696 WP_147658291.1 ComF family protein Machinery gene
  QY867_RS08555 (QY867_08540) comFA 1680412..1681749 (-) 1338 WP_099947263.1 DEAD/DEAH box helicase Machinery gene
  QY867_RS08560 (QY867_08545) - 1681811..1682476 (+) 666 WP_056948841.1 YigZ family protein -
  QY867_RS08565 (QY867_08550) - 1682502..1683590 (-) 1089 WP_056948881.1 MraY family glycosyltransferase -
  QY867_RS08570 (QY867_08555) rny 1683743..1685308 (-) 1566 WP_056948843.1 ribonuclease Y -

Sequence

Protein


Download         Length: 445 a.a.        Molecular weight: 50256.72 Da        Isoelectric Point: 9.6659

>NTDB_id=854079 QY867_RS08555 WP_099947263.1 1680412..1681749(-) (comFA) [Latilactobacillus sakei strain A1291]
MGQPVIACGRQFTAAQLADTQNNNYSLPQIERRPAFLRVKQRLICQRCQQVVPSQTCLPDGRHYCAQCLLFGRLVEGDWL
YTIPEDHLFKTATPKLTWAGQLTVYQEQAAQAVVAVIQAHKWHVLTAVTGAGKTEMLFQGILVALQKGQRVCLAAPRVAV
CLELYPRLQAAFATTSIMLMHGEQTEPYRYTQLVICTTHQLLKFYHAFDTVIVDEVDAFPFVDNPVLATAVEQACKPQCA
LLYLTATPTPAIKRAIAAKQMTVSELPLRFHGGILPEPQRHVAFNWRPRLKKGRLPKRLEHDCQICLKNQQILLFVPQVR
LLKPVANRLSILLPAVRIETVHANDPEQIEKIAAFRAQQIQLMVTTTILERGVTFKNVAVLVLGAEHMVFNEAVLVQIAG
RAGRHKDYTQNPVHFYYQDYTRAIKGACRQIKTQNQRGWRLQSTV

Nucleotide


Download         Length: 1338 bp        

>NTDB_id=854079 QY867_RS08555 WP_099947263.1 1680412..1681749(-) (comFA) [Latilactobacillus sakei strain A1291]
ATGGGACAACCAGTGATTGCCTGTGGCCGCCAGTTTACTGCGGCCCAGTTAGCCGATACGCAAAATAATAATTATAGTTT
ACCACAGATTGAGCGCCGACCCGCGTTTTTACGGGTCAAGCAACGTTTAATCTGCCAACGTTGTCAGCAAGTGGTACCGT
CGCAAACTTGCTTACCAGACGGCCGTCATTATTGCGCGCAGTGTTTGTTATTTGGTCGTTTAGTAGAAGGGGATTGGTTA
TATACAATCCCTGAGGATCATTTATTTAAAACCGCTACACCGAAGTTGACGTGGGCAGGCCAATTAACAGTGTATCAGGA
ACAAGCCGCCCAAGCAGTGGTAGCGGTTATTCAAGCCCATAAATGGCACGTATTAACAGCCGTGACCGGTGCCGGGAAGA
CCGAGATGCTTTTTCAAGGGATTCTAGTCGCACTACAAAAGGGACAGCGAGTGTGTTTGGCAGCACCTAGAGTCGCAGTT
TGTCTAGAACTGTATCCGCGGCTTCAAGCCGCCTTTGCGACGACTAGTATCATGTTGATGCATGGCGAGCAAACCGAGCC
CTATCGCTATACCCAGTTAGTGATTTGCACGACACATCAATTACTGAAGTTTTATCACGCTTTTGATACGGTCATCGTTG
ATGAAGTGGATGCTTTTCCTTTTGTTGATAATCCAGTTTTAGCCACGGCAGTTGAACAAGCCTGTAAGCCTCAGTGTGCG
TTATTATATTTAACGGCTACGCCGACACCAGCCATCAAGCGGGCGATTGCTGCTAAACAAATGACAGTTAGTGAATTACC
GCTTCGCTTTCATGGGGGAATATTGCCAGAACCGCAACGGCATGTCGCTTTCAATTGGCGGCCGCGATTAAAGAAGGGCC
GGTTACCTAAACGACTTGAGCATGATTGCCAGATTTGTTTAAAAAACCAGCAGATTTTGCTATTTGTACCGCAAGTCAGA
TTATTAAAACCAGTTGCCAATCGACTATCAATTTTATTACCGGCGGTCAGAATTGAGACGGTGCACGCAAACGATCCTGA
ACAAATTGAAAAGATCGCGGCGTTTAGGGCTCAACAAATTCAATTAATGGTGACGACCACTATTTTGGAGCGGGGGGTCA
CATTTAAAAATGTTGCGGTTTTGGTCTTAGGCGCGGAACACATGGTGTTTAATGAAGCCGTTTTGGTCCAGATTGCCGGG
CGAGCAGGACGGCATAAAGACTATACCCAAAATCCAGTTCATTTTTATTATCAAGACTATACGCGGGCGATCAAAGGCGC
TTGTCGGCAAATTAAGACCCAAAATCAGAGGGGATGGCGATTACAATCAACTGTTTAA

Domains

Predicted by InterproScan.

Helicase conserved C-terminal domain (Helicase_C)

(307-405)

Type III restriction enzyme, res subunit (ResIII)

(102-248)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comFA Latilactobacillus sakei subsp. sakei 23K

91.91

100

0.919
  comFA/cflA Streptococcus pneumoniae TIGR4

38.979

96.854

0.378
  comFA/cflA Streptococcus pneumoniae Rx1

38.747

96.854

0.375
  comFA/cflA Streptococcus pneumoniae D39

38.747

96.854

0.375
  comFA/cflA Streptococcus pneumoniae R6

38.747

96.854

0.375
  comFA/cflA Streptococcus mitis NCTC 12261

38.515

96.854

0.373
  comFA/cflA Streptococcus mitis SK321

38.372

96.629

0.371