Detailed information    

insolico Bioinformatically predicted

Overview

Name   comFC   Type   Machinery gene
Locus tag   QY867_RS08550 Genome accession   NZ_CP129529
Coordinates   1679741..1680436 (-) Length   231 a.a.
NCBI ID   WP_147658291.1    Uniprot ID   -
Organism   Latilactobacillus sakei strain A1291     
Function   ssDNA transport into the cell (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1674741..1685436
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QY867_RS08540 (QY867_08525) secA 1676457..1678820 (-) 2364 WP_011374203.1 preprotein translocase subunit SecA -
  QY867_RS08545 (QY867_08530) raiA 1679069..1679614 (-) 546 WP_056948836.1 ribosome-associated translation inhibitor RaiA -
  QY867_RS08550 (QY867_08535) comFC 1679741..1680436 (-) 696 WP_147658291.1 ComF family protein Machinery gene
  QY867_RS08555 (QY867_08540) comFA 1680412..1681749 (-) 1338 WP_099947263.1 DEAD/DEAH box helicase Machinery gene
  QY867_RS08560 (QY867_08545) - 1681811..1682476 (+) 666 WP_056948841.1 YigZ family protein -
  QY867_RS08565 (QY867_08550) - 1682502..1683590 (-) 1089 WP_056948881.1 MraY family glycosyltransferase -
  QY867_RS08570 (QY867_08555) rny 1683743..1685308 (-) 1566 WP_056948843.1 ribonuclease Y -

Sequence

Protein


Download         Length: 231 a.a.        Molecular weight: 26933.39 Da        Isoelectric Point: 9.4488

>NTDB_id=854078 QY867_RS08550 WP_147658291.1 1679741..1680436(-) (comFC) [Latilactobacillus sakei strain A1291]
MAITINCLMCQNVIIEKPSIKQLLQLKPLLKPHICQICLQQFEPISGNQCSDCSRPLLTGILCSDCQHWRQLYPQQHFKN
QALFTYNRAMQLYFQRYKGQGDYQLRLLFERDIQTRFPVKPNVAYVPIPSDEQHQQARGFNPVQGLFENCFPLMSLLKKR
PTEKGQAQKNRAERLASPQFFELIPQKLPDKLQSITILDDIYTTGRTLWHAQQCLRARYPQITINAITLAR

Nucleotide


Download         Length: 696 bp        

>NTDB_id=854078 QY867_RS08550 WP_147658291.1 1679741..1680436(-) (comFC) [Latilactobacillus sakei strain A1291]
ATGGCGATTACAATCAACTGTTTAATGTGTCAAAATGTCATTATTGAAAAGCCAAGTATTAAACAACTGCTACAACTAAA
ACCACTACTTAAACCGCATATCTGTCAAATTTGTTTACAGCAGTTTGAACCTATCAGTGGCAACCAGTGTTCGGATTGTA
GTCGGCCACTATTGACGGGCATTTTATGTTCTGATTGTCAGCATTGGCGACAACTTTACCCCCAACAGCATTTTAAAAAT
CAAGCATTGTTTACTTATAATCGGGCGATGCAGTTATATTTTCAACGTTATAAGGGCCAAGGAGATTATCAATTACGGTT
ACTATTTGAACGGGACATTCAAACGCGGTTTCCAGTAAAGCCCAATGTAGCTTACGTGCCGATCCCATCCGATGAGCAAC
ATCAACAAGCACGCGGTTTTAATCCAGTCCAAGGCTTATTCGAAAATTGTTTTCCGCTAATGTCACTCTTGAAAAAGCGA
CCAACGGAAAAGGGGCAAGCGCAAAAAAATCGTGCAGAACGACTCGCAAGTCCGCAATTTTTTGAATTAATACCACAAAA
GTTACCTGATAAGCTACAGTCGATAACGATTCTAGATGATATTTACACGACCGGTCGAACGTTGTGGCATGCTCAGCAAT
GTCTGCGTGCTCGTTATCCGCAAATTACAATTAATGCAATTACTTTGGCCAGATAG

Domains


No domain identified.



Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comFC Latilactobacillus sakei subsp. sakei 23K

91.549

61.472

0.563