Detailed information    

insolico Bioinformatically predicted

Overview

Name   ciaH   Type   Regulator
Locus tag   QYM01_RS04830 Genome accession   NZ_CP129527
Coordinates   1006854..1008164 (+) Length   436 a.a.
NCBI ID   WP_138119272.1    Uniprot ID   -
Organism   Streptococcus equi subsp. zooepidemicus strain BJ-1     
Function   Required for optimal comC expression (predicted from homology)   
Competence regulation

Genomic Context

Location: 1001854..1013164
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QYM01_RS04815 (QYM01_04815) phoU 1002335..1002988 (+) 654 WP_012678018.1 phosphate signaling complex protein PhoU -
  QYM01_RS04820 (QYM01_04820) - 1003223..1005760 (+) 2538 WP_301900688.1 M1 family metallopeptidase -
  QYM01_RS04825 (QYM01_04825) ciaR 1006187..1006861 (+) 675 WP_111678058.1 response regulator transcription factor Regulator
  QYM01_RS04830 (QYM01_04830) ciaH 1006854..1008164 (+) 1311 WP_138119272.1 HAMP domain-containing sensor histidine kinase Regulator
  QYM01_RS04835 (QYM01_04835) - 1008524..1008943 (+) 420 WP_165628094.1 hypothetical protein -
  QYM01_RS04840 (QYM01_04840) - 1008944..1009147 (+) 204 WP_301900692.1 hypothetical protein -
  QYM01_RS04845 (QYM01_04845) - 1009157..1009552 (+) 396 WP_111678061.1 DUF1433 domain-containing protein -
  QYM01_RS04850 (QYM01_04850) - 1009552..1009797 (+) 246 WP_111678062.1 hypothetical protein -
  QYM01_RS04855 (QYM01_04855) - 1009816..1010214 (+) 399 WP_231871354.1 hypothetical protein -
  QYM01_RS04860 (QYM01_04860) - 1010217..1011410 (+) 1194 WP_301900695.1 hypothetical protein -
  QYM01_RS04865 (QYM01_04865) - 1011407..1011799 (+) 393 WP_301899586.1 hypothetical protein -
  QYM01_RS04870 (QYM01_04870) - 1011818..1012102 (+) 285 WP_043030111.1 hypothetical protein -
  QYM01_RS04875 (QYM01_04875) rpsT 1012312..1012560 (-) 249 WP_012678006.1 30S ribosomal protein S20 -

Sequence

Protein


Download         Length: 436 a.a.        Molecular weight: 49646.28 Da        Isoelectric Point: 9.5548

>NTDB_id=853992 QYM01_RS04830 WP_138119272.1 1006854..1008164(+) (ciaH) [Streptococcus equi subsp. zooepidemicus strain BJ-1]
MNKLKKELLSDNYTHFFHFFAIFTGIFVVMTIIILQIMRFSVYSTVDSSLISVGQNASNYANRTMARISSFYFDAENNLI
QALPELEASKSLGSSTTNMDIILFSANGTILNSFDAFSNYQSFRLDKSQLNNIVTTQLMNFYGQKEKYHTLTVKVHIKNY
PAVAYMMAVVNVQQLDTANERYEQIIIMVMIVFWLISILASIYLAKWSRKPIMESYAKQKMFVENASHELRTPLAVLQNR
LESLFRKPNETILDNSEHIASSLDEVRNMRILTTNLLNLARRDDGIKPQLVDVDAAFFDTVFENYQLVAEESGKQFISAN
QINRPLKTDKALLKQLMTILFDNAIKYTDHNGVVEVKVRTTDKHLLISVIDNGPGIKDDDKKKIFDRFYRVDKARTRQKG
GFGLGLALAQQIVTSLKGTITVSDNKPTGAIFEVKL

Nucleotide


Download         Length: 1311 bp        

>NTDB_id=853992 QYM01_RS04830 WP_138119272.1 1006854..1008164(+) (ciaH) [Streptococcus equi subsp. zooepidemicus strain BJ-1]
ATGAATAAACTAAAAAAAGAATTATTGTCCGATAATTATACACATTTTTTTCATTTCTTTGCTATTTTTACAGGCATTTT
TGTTGTCATGACCATCATTATTTTGCAAATCATGAGGTTTAGTGTCTATTCCACAGTAGACAGCAGTCTCATTTCGGTTG
GTCAAAATGCCAGCAACTATGCCAATAGGACCATGGCGAGAATATCTTCCTTTTATTTTGATGCAGAAAATAACCTTATT
CAGGCTCTTCCTGAATTGGAAGCGTCAAAATCACTTGGCTCCTCCACCACTAATATGGATATTATTTTATTTAGTGCCAA
TGGGACGATATTGAATTCCTTTGATGCCTTCTCCAATTACCAAAGCTTTCGTTTAGACAAAAGTCAGCTTAATAACATCG
TCACAACACAGCTGATGAATTTTTATGGGCAAAAGGAGAAATACCATACCCTAACCGTTAAGGTCCACATCAAAAACTAT
CCGGCAGTGGCTTATATGATGGCAGTGGTTAATGTTCAGCAACTGGATACTGCCAATGAGCGCTATGAACAGATTATTAT
CATGGTTATGATTGTCTTTTGGTTAATTTCGATTTTAGCCAGCATTTATTTAGCGAAATGGAGCAGAAAGCCAATTATGG
AGAGCTATGCCAAGCAAAAAATGTTTGTAGAAAATGCCAGTCATGAGCTTAGGACTCCTTTGGCTGTGCTGCAAAATCGT
TTGGAATCACTGTTTAGAAAGCCTAACGAAACCATTTTAGACAATAGCGAGCATATTGCGTCAAGCCTAGATGAGGTTCG
TAATATGAGAATATTAACCACTAATTTGTTGAATTTAGCTAGACGCGATGATGGGATCAAGCCGCAGCTAGTTGATGTTG
ATGCAGCCTTTTTTGATACTGTTTTTGAAAATTATCAATTAGTTGCAGAAGAATCAGGCAAGCAGTTTATCTCAGCCAAT
CAGATCAATAGGCCCTTAAAGACGGATAAGGCTTTGCTCAAGCAGCTGATGACCATTTTGTTTGATAATGCGATCAAATA
TACTGATCATAACGGTGTGGTTGAGGTCAAGGTTAGAACGACCGATAAGCATTTATTGATTTCTGTTATTGATAATGGCC
CAGGGATCAAGGATGATGATAAGAAAAAGATTTTTGATCGCTTTTACCGAGTGGATAAGGCAAGGACACGCCAAAAAGGA
GGCTTTGGACTCGGATTGGCCTTAGCGCAGCAGATCGTTACCTCATTAAAAGGAACGATTACCGTCAGTGATAATAAGCC
TACCGGCGCCATCTTTGAAGTAAAATTATAG

Domains

Predicted by InterproScan.

Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase (HATPase_c)

(329-436)

His Kinase A (phospho-acceptor) domain (HisKA)

(220-285)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ciaH Streptococcus mutans UA159

57.895

100

0.58
  ciaH Streptococcus pneumoniae Rx1

51.376

100

0.514
  ciaH Streptococcus pneumoniae D39

51.376

100

0.514
  ciaH Streptococcus pneumoniae R6

51.376

100

0.514
  ciaH Streptococcus pneumoniae TIGR4

51.376

100

0.514