Detailed information    

insolico Bioinformatically predicted

Overview

Name   comGE   Type   Machinery gene
Locus tag   V6U68_RS09400 Genome accession   NZ_CP145866
Coordinates   2014716..2015006 (-) Length   96 a.a.
NCBI ID   WP_195435963.1    Uniprot ID   -
Organism   Streptococcus salivarius strain KSS9     
Function   dsDNA binding to the cell surface; assembly of the pseudopilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2009716..2020006
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  V6U68_RS09365 (V6U68_09345) - 2010106..2010552 (-) 447 WP_013991259.1 hypothetical protein -
  V6U68_RS09370 (V6U68_09350) - 2010630..2011286 (-) 657 WP_037601483.1 CPBP family intramembrane glutamic endopeptidase -
  V6U68_RS09375 (V6U68_09355) - 2011298..2011495 (-) 198 WP_002885716.1 helix-turn-helix transcriptional regulator -
  V6U68_RS09380 (V6U68_09360) - 2011746..2012939 (-) 1194 WP_003095894.1 acetate kinase -
  V6U68_RS09385 (V6U68_09365) comGH 2012996..2013952 (-) 957 WP_037601477.1 class I SAM-dependent methyltransferase Machinery gene
  V6U68_RS09390 (V6U68_09370) comGG 2013997..2014314 (-) 318 WP_041817287.1 competence type IV pilus minor pilin ComGG Machinery gene
  V6U68_RS09395 (V6U68_09375) comGF 2014292..2014729 (-) 438 WP_080611747.1 competence type IV pilus minor pilin ComGF Machinery gene
  V6U68_RS09400 (V6U68_09380) comGE 2014716..2015006 (-) 291 WP_195435963.1 competence type IV pilus minor pilin ComGE Machinery gene
  V6U68_RS09405 (V6U68_09385) comGD 2014978..2015406 (-) 429 WP_267472584.1 competence type IV pilus minor pilin ComGD Machinery gene
  V6U68_RS09410 (V6U68_09390) comGC 2015366..2015692 (-) 327 WP_002885815.1 competence type IV pilus major pilin ComGC Machinery gene
  V6U68_RS09415 (V6U68_09395) comGB 2015689..2016789 (-) 1101 WP_410531677.1 competence type IV pilus assembly protein ComGB Machinery gene
  V6U68_RS09420 (V6U68_09400) comGA 2016671..2017612 (-) 942 WP_201041167.1 competence type IV pilus ATPase ComGA Machinery gene
  V6U68_RS09425 (V6U68_09405) - 2017692..2018054 (-) 363 WP_073949471.1 DUF1033 family protein -
  V6U68_RS09430 (V6U68_09410) - 2018266..2019515 (+) 1250 Protein_1801 ISL3 family transposase -

Sequence

Protein


Download         Length: 96 a.a.        Molecular weight: 10732.70 Da        Isoelectric Point: 10.6199

>NTDB_id=853897 V6U68_RS09400 WP_195435963.1 2014716..2015006(-) (comGE) [Streptococcus salivarius strain KSS9]
MVNIKRRFLRGYILVESLVAMAVLVLVSGLILDQINTNRRLMAENLHQQEVLSVATMAVQTKQDQLTLNGITVTVKRSKQ
GIAVYESGKEIIHVSK

Nucleotide


Download         Length: 291 bp        

>NTDB_id=853897 V6U68_RS09400 WP_195435963.1 2014716..2015006(-) (comGE) [Streptococcus salivarius strain KSS9]
GTGGTAAATATAAAAAGACGGTTTCTTAGAGGCTATATTCTTGTCGAAAGCCTGGTAGCAATGGCTGTTTTAGTACTTGT
CAGTGGTCTTATCTTGGATCAGATCAATACCAATCGTAGACTAATGGCTGAGAATCTCCATCAACAAGAGGTCTTAAGTG
TGGCAACCATGGCAGTTCAGACCAAACAGGATCAGTTGACCTTAAATGGTATCACAGTGACAGTAAAACGTAGCAAGCAA
GGTATCGCGGTTTATGAATCAGGAAAGGAGATTATTCATGTCTCTAAATAG

Domains

Predicted by InterProScan.

Type II secretory pathway pseudopilin (ComGE)

(13-94)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comGE Streptococcus mutans UA140

42.708

100

0.427
  comGE Streptococcus mutans UA159

42.708

100

0.427