Detailed information    

insolico Bioinformatically predicted

Overview

Name   recG/mmsA   Type   Machinery gene
Locus tag   V6U68_RS08655 Genome accession   NZ_CP145866
Coordinates   1881265..1883283 (-) Length   672 a.a.
NCBI ID   WP_198463620.1    Uniprot ID   -
Organism   Streptococcus salivarius strain KSS9     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1876265..1888283
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  V6U68_RS08630 (V6U68_08610) - 1876934..1878523 (+) 1590 WP_073686392.1 ATP-binding cassette domain-containing protein -
  V6U68_RS08635 (V6U68_08615) - 1878662..1878874 (-) 213 WP_002884695.1 helix-turn-helix domain-containing protein -
  V6U68_RS08640 (V6U68_08620) - 1878884..1879492 (-) 609 WP_347092625.1 DUF2975 domain-containing protein -
  V6U68_RS08645 (V6U68_08625) - 1879686..1880123 (-) 438 WP_198463622.1 hypothetical protein -
  V6U68_RS08650 (V6U68_08630) - 1880747..1881253 (-) 507 WP_198463621.1 hypothetical protein -
  V6U68_RS08655 (V6U68_08635) recG/mmsA 1881265..1883283 (-) 2019 WP_198463620.1 ATP-dependent DNA helicase RecG Machinery gene
  V6U68_RS08660 (V6U68_08640) alr 1883416..1884519 (-) 1104 WP_368386552.1 alanine racemase -
  V6U68_RS08665 (V6U68_08645) acpS 1884547..1884900 (-) 354 WP_002891813.1 holo-ACP synthase -
  V6U68_RS08670 (V6U68_08650) - 1884903..1885934 (-) 1032 WP_347096045.1 3-deoxy-7-phosphoheptulonate synthase -
  V6U68_RS08675 (V6U68_08655) - 1886019..1887050 (-) 1032 WP_002891816.1 3-deoxy-7-phosphoheptulonate synthase -

Sequence

Protein


Download         Length: 672 a.a.        Molecular weight: 75330.67 Da        Isoelectric Point: 6.0008

>NTDB_id=853883 V6U68_RS08655 WP_198463620.1 1881265..1883283(-) (recG/mmsA) [Streptococcus salivarius strain KSS9]
MIQLDSPIADLKGFGPKSAEKFTKLDLYTVGDLLLYFPFRYEDFKSKSIFELMDGEKAVITGTVVTPANVQYYGFKRNRL
SFKIKQGEAVIAISFFNQPYLVDKIEMGAEVAIFGKWDQKKSAVTGMKVLAQVEDDMQPVYHVAQGVSQAQLIKAIKAAF
DSGALNLLEENLPQVLLDKYRLMRRQEAVRAMHFPKDLAEYKQALRRTKFEELFYFQMNLQVLKAENKSETNGLAIAYDE
AKIKVKIAALPFPLTEAQQRSLSEILADMKSGAHMNRLLQGDVGSGKTVIASLAMYGAYTAGFQSALMVPTEILAEQHYQ
SLQGLFPELEVVLLTSGMKAADKKVALSKIESGEAQMIVGTHSLIQDAVTYHSLGLVITDEQHRFGVNQRRIFREKGDNP
DVLMMTATPIPRTLAITAFGEMDVSIIDQMPAGRKPIITRWVKHEQLDTVLTWIKGELEKDAQVYFISPLIEESEALDLK
NAVALHQELTEFFGDSATVALMHGRMKNDEKDQIMQNFKDRKSQILVSTTVIEVGVNVPNATVMVIMDADRFGLSQLHQL
RGRVGRGDKQSYCVLVANPKNDTGKKRMQAMCETTDGFVLAEEDLKMRGSGEIFGTRQSGIPEFQVADIVEDYNILEEAR
RVASQIVSDPNWRENPEWKVLGAHLRSQGEFD

Nucleotide


Download         Length: 2019 bp        

>NTDB_id=853883 V6U68_RS08655 WP_198463620.1 1881265..1883283(-) (recG/mmsA) [Streptococcus salivarius strain KSS9]
ATGATTCAACTAGATTCACCAATTGCGGATTTGAAAGGCTTTGGGCCTAAGTCCGCTGAAAAATTTACCAAATTAGATTT
ATACACGGTTGGGGACCTCTTGCTTTATTTTCCTTTCCGATATGAGGATTTTAAGAGTAAGTCTATCTTTGAACTGATGG
ATGGCGAAAAGGCTGTTATTACGGGAACAGTGGTGACGCCTGCCAATGTGCAGTATTATGGCTTTAAACGGAATCGTCTG
AGTTTTAAAATCAAGCAAGGAGAGGCTGTGATTGCCATTAGTTTCTTCAACCAACCTTATCTTGTGGATAAGATTGAGAT
GGGGGCAGAAGTGGCTATTTTTGGCAAATGGGACCAGAAGAAGTCTGCTGTGACTGGTATGAAAGTCCTGGCTCAAGTTG
AGGACGATATGCAGCCAGTCTACCATGTGGCCCAGGGTGTTAGTCAGGCCCAACTGATAAAGGCCATAAAGGCAGCTTTT
GATAGTGGGGCCCTTAATTTGTTGGAGGAAAATCTCCCTCAGGTGCTGCTGGACAAGTACCGTCTCATGAGACGTCAAGA
GGCTGTGCGTGCCATGCATTTTCCGAAAGATTTGGCTGAATATAAGCAGGCTCTACGTAGGACTAAGTTTGAGGAGCTCT
TTTATTTCCAGATGAATTTACAGGTGCTGAAGGCTGAAAATAAGTCCGAAACCAATGGTCTAGCAATTGCTTACGATGAA
GCCAAAATCAAAGTCAAAATTGCAGCATTACCATTCCCCTTAACAGAGGCCCAACAGCGTAGTTTATCGGAAATACTAGC
TGATATGAAATCTGGGGCTCATATGAACCGTCTCTTGCAAGGAGATGTGGGCTCAGGGAAAACAGTTATCGCTAGCTTGG
CTATGTATGGGGCCTATACGGCAGGATTTCAGTCTGCCCTCATGGTACCGACGGAAATCTTAGCAGAGCAGCATTATCAG
AGTTTACAGGGGCTTTTTCCTGAGTTAGAGGTAGTGCTCCTAACTTCTGGAATGAAGGCGGCGGATAAGAAAGTAGCCCT
TTCCAAAATCGAGTCTGGGGAGGCTCAGATGATTGTGGGAACCCACTCGTTGATTCAAGATGCAGTGACTTATCATAGTC
TTGGGCTAGTCATTACTGATGAACAGCACCGATTTGGAGTTAATCAACGTCGTATTTTCCGTGAGAAGGGTGACAATCCT
GATGTCCTCATGATGACAGCGACCCCTATCCCTAGGACCTTGGCAATCACTGCCTTTGGGGAGATGGATGTATCTATCAT
TGACCAGATGCCAGCTGGACGTAAGCCCATCATCACCCGTTGGGTTAAACATGAGCAACTAGATACCGTACTGACTTGGA
TTAAGGGGGAGTTGGAAAAAGATGCTCAGGTCTATTTTATTTCTCCTCTGATTGAAGAGTCTGAGGCTCTTGATTTGAAA
AATGCCGTTGCTCTTCACCAGGAACTCACAGAGTTCTTTGGGGATTCAGCTACAGTAGCTCTGATGCACGGTCGTATGAA
AAATGATGAAAAAGACCAAATTATGCAAAATTTCAAGGACAGAAAATCTCAGATTTTAGTATCAACCACAGTTATCGAAG
TAGGGGTTAACGTGCCAAATGCTACAGTTATGGTCATTATGGATGCGGATCGTTTTGGACTTAGCCAGCTTCACCAGCTT
CGAGGGCGTGTAGGTCGTGGCGATAAGCAGTCCTACTGTGTTTTGGTGGCTAATCCTAAAAATGATACTGGTAAAAAACG
CATGCAGGCCATGTGTGAGACCACGGATGGCTTTGTTCTAGCTGAGGAGGATCTTAAAATGCGTGGCTCAGGTGAAATCT
TTGGGACACGTCAGTCAGGTATTCCTGAATTTCAGGTGGCCGATATTGTGGAAGACTACAATATCTTAGAGGAAGCCAGA
CGGGTGGCTAGCCAAATTGTATCTGACCCTAACTGGCGAGAGAATCCTGAATGGAAGGTGCTAGGAGCACATTTGAGAAG
CCAAGGCGAGTTTGATTGA

Domains

Predicted by InterProScan.

DEAD/DEAH box helicase (DEAD)

(255-412)

Helicase conserved C-terminal domain (Helicase_C)

(459-567)

RecG wedge domain (RecG_wedge)

(11-158)

ATP-dependent DNA helicase RecG, domain 3, C-terminal (RecG_dom3_C)

(594-667)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recG/mmsA Streptococcus pneumoniae R6

71.833

99.851

0.717
  recG/mmsA Streptococcus pneumoniae R36A

71.833

99.851

0.717
  recG Bacillus subtilis subsp. subtilis str. 168

49.48

100

0.496
  recG Neisseria meningitidis strain C311

39.403

99.702

0.393