Detailed information    

insolico Bioinformatically predicted

Overview

Name   vraR   Type   Regulator
Locus tag   V6U68_RS07100 Genome accession   NZ_CP145866
Coordinates   1566224..1566868 (-) Length   214 a.a.
NCBI ID   WP_002884791.1    Uniprot ID   -
Organism   Streptococcus salivarius strain KSS9     
Function   repress expression of competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 1561224..1571868
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  V6U68_RS07075 (V6U68_07055) - 1563302..1564300 (-) 999 WP_347101520.1 NAD(P)/FAD-dependent oxidoreductase -
  V6U68_RS07080 (V6U68_07060) trmD 1564302..1565021 (-) 720 WP_410531516.1 tRNA (guanosine(37)-N1)-methyltransferase TrmD -
  V6U68_RS07085 (V6U68_07065) rimM 1565011..1565529 (-) 519 WP_002884411.1 ribosome maturation factor RimM -
  V6U68_RS07100 (V6U68_07080) vraR 1566224..1566868 (-) 645 WP_002884791.1 response regulator transcription factor Regulator
  V6U68_RS07105 (V6U68_07085) - 1566858..1567868 (-) 1011 WP_201036009.1 sensor histidine kinase -
  V6U68_RS07110 (V6U68_07090) liaF 1567865..1568563 (-) 699 WP_073685667.1 cell wall-active antibiotics response protein LiaF -
  V6U68_RS07115 (V6U68_07095) - 1568726..1569484 (-) 759 WP_198463717.1 potassium channel family protein -
  V6U68_RS07120 (V6U68_07100) stkP/pknB 1569630..1571504 (-) 1875 WP_410531519.1 Stk1 family PASTA domain-containing Ser/Thr kinase Regulator

Sequence

Protein


Download         Length: 214 a.a.        Molecular weight: 23977.31 Da        Isoelectric Point: 4.5814

>NTDB_id=853859 V6U68_RS07100 WP_002884791.1 1566224..1566868(-) (vraR) [Streptococcus salivarius strain KSS9]
MSNKINVILVDDHEMVRLGLKSFLNLQGDVEVVGEAGNGREGVDLALELRPDVVVMDLVMPELDGVQATLELLKEWPEAK
ILVLTSYLDNEKIYPVIEAGAKGYMLKTSSAAEILNSIRKVYRGEEAIETEVDNKIKYHDSHPDLHDDLTARERDILALL
AKGYDNQTIANELFISLKTVKTHVSNILGKLNVDDRTQAVVYAFRHHLVSQDDE

Nucleotide


Download         Length: 645 bp        

>NTDB_id=853859 V6U68_RS07100 WP_002884791.1 1566224..1566868(-) (vraR) [Streptococcus salivarius strain KSS9]
ATGTCGAATAAGATTAATGTGATTTTGGTCGATGACCATGAGATGGTCCGTTTGGGCCTTAAGAGTTTCTTGAATCTCCA
AGGAGATGTAGAAGTCGTTGGAGAGGCAGGGAATGGTCGAGAGGGTGTCGATCTTGCCTTGGAACTGCGTCCGGATGTCG
TTGTTATGGACCTTGTTATGCCTGAATTAGATGGTGTTCAAGCAACTTTGGAATTGCTCAAAGAATGGCCTGAAGCCAAG
ATTTTGGTTTTGACTAGCTATTTGGACAATGAAAAAATTTATCCAGTCATTGAAGCTGGTGCCAAAGGCTATATGCTTAA
AACCAGCAGTGCGGCAGAGATTCTTAATAGTATTCGTAAGGTCTACCGTGGGGAAGAAGCCATCGAAACTGAGGTGGACA
ATAAGATTAAATACCACGATAGTCATCCCGACCTCCATGATGACTTGACAGCGCGTGAACGTGATATCCTGGCACTTTTG
GCTAAGGGGTATGACAATCAGACCATTGCTAACGAGCTATTCATTTCATTGAAAACCGTTAAAACTCACGTGTCTAATAT
CCTAGGAAAACTTAATGTTGATGACCGTACTCAGGCTGTCGTTTATGCCTTTAGACATCATTTGGTGTCGCAAGATGATG
AATAA

Domains

Predicted by InterProScan.

Bacterial regulatory proteins, luxR family (GerE)

(149-203)

Response regulator receiver domain (Response_reg)

(7-118)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  vraR Staphylococcus aureus N315

50.485

96.262

0.486
  degU Bacillus subtilis subsp. subtilis str. 168

36.161

100

0.379