Detailed information    

insolico Bioinformatically predicted

Overview

Name   scnR   Type   Regulator
Locus tag   V6U68_RS02720 Genome accession   NZ_CP145866
Coordinates   542855..543553 (-) Length   232 a.a.
NCBI ID   WP_410531870.1    Uniprot ID   -
Organism   Streptococcus salivarius strain KSS9     
Function   regulate comX expression (predicted from homology)   
Competence regulation

Genomic Context

Location: 537855..548553
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  V6U68_RS02700 (V6U68_02695) - 538293..538898 (+) 606 WP_410531867.1 response regulator -
  V6U68_RS02705 (V6U68_02700) - 539206..540408 (+) 1203 WP_410531868.1 IS110 family transposase -
  V6U68_RS02710 (V6U68_02705) - 541061..541195 (+) 135 WP_410532079.1 putative holin-like toxin -
  V6U68_RS02715 (V6U68_02710) - 541488..542858 (-) 1371 WP_410531869.1 sensor histidine kinase -
  V6U68_RS02720 (V6U68_02715) scnR 542855..543553 (-) 699 WP_410531870.1 response regulator transcription factor Regulator
  V6U68_RS02725 (V6U68_02720) - 543734..543874 (+) 141 WP_410531872.1 type A2 lanthipeptide -
  V6U68_RS02730 (V6U68_02725) - 544028..544939 (+) 912 WP_187540594.1 ABC transporter ATP-binding protein -
  V6U68_RS02735 (V6U68_02730) - 544945..545694 (+) 750 WP_410531873.1 ABC transporter permease -
  V6U68_RS02740 (V6U68_02735) - 545691..546095 (+) 405 WP_410531875.1 hypothetical protein -
  V6U68_RS02745 (V6U68_02740) - 546148..546417 (+) 270 WP_410531876.1 hypothetical protein -
  V6U68_RS02750 (V6U68_02745) - 546507..546774 (+) 268 Protein_494 peptidylprolyl isomerase -
  V6U68_RS02755 (V6U68_02750) - 546759..546941 (-) 183 Protein_495 IS110 family transposase -
  V6U68_RS02760 (V6U68_02755) - 547460..548137 (+) 678 WP_410531877.1 transposase -

Sequence

Protein


Download         Length: 232 a.a.        Molecular weight: 26417.33 Da        Isoelectric Point: 5.1554

>NTDB_id=853825 V6U68_RS02720 WP_410531870.1 542855..543553(-) (scnR) [Streptococcus salivarius strain KSS9]
MSLEQQLLNKHILIIDDDKILNSSIRDILTAYGFSNLTSAYDIESSLDMIEIEQFDLFLLDIMLPDGDGYTLAKHIRKKG
DTPILFLTAKNNPEDEIAGFNAGGDDYVMKPFIPKNLIYRIMALLRRSYKSEQESIQIGQTLVNFRNATVQKNGAEISIT
PIEIQILKKLYDNKNYIVSTESLCDTIWGVDSFGYENSLTVHIRKIREKIEENPSKPQYLKTAKGLGYKLLS

Nucleotide


Download         Length: 699 bp        

>NTDB_id=853825 V6U68_RS02720 WP_410531870.1 542855..543553(-) (scnR) [Streptococcus salivarius strain KSS9]
ATGAGTTTAGAACAACAACTCCTGAATAAGCACATCCTTATCATTGATGACGATAAAATTTTAAACTCTTCCATAAGAGA
TATTCTCACTGCCTACGGATTTTCCAATCTAACATCAGCCTATGATATAGAATCTAGTTTGGACATGATTGAAATAGAGC
AGTTCGATCTTTTCCTTTTGGACATTATGCTACCCGATGGTGATGGCTACACATTAGCAAAACATATCCGAAAAAAAGGC
GATACTCCTATCCTCTTTCTGACTGCCAAAAATAATCCTGAAGATGAGATAGCTGGTTTCAATGCTGGTGGTGATGATTA
TGTCATGAAACCCTTCATTCCAAAAAATCTTATCTATCGTATTATGGCTCTGCTCCGGAGAAGTTATAAATCAGAACAGG
AATCAATACAGATTGGACAGACTTTGGTGAATTTTCGGAATGCAACAGTACAAAAAAATGGAGCAGAAATTTCTATTACG
CCAATTGAAATTCAGATTTTGAAAAAACTTTACGATAATAAAAATTACATCGTTTCAACCGAATCTCTCTGTGATACGAT
TTGGGGAGTGGATAGCTTTGGTTATGAAAATTCTTTGACTGTACATATTCGGAAAATTCGAGAAAAAATAGAAGAAAATC
CTTCAAAACCTCAATATTTAAAGACAGCTAAAGGGCTAGGGTATAAATTGTTATCATGA

Domains

Predicted by InterProScan.

Response regulator receiver domain (Response_reg)

(12-121)

Transcriptional regulatory protein, C terminal (Trans_reg_C)

(155-230)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  scnR Streptococcus mutans UA159

44.796

95.259

0.427
  micA Streptococcus pneumoniae Cp1015

38.596

98.276

0.379
  vicR Streptococcus mutans UA159

36.481

100

0.366