Detailed information    

insolico Bioinformatically predicted

Overview

Name   ruvA   Type   Machinery gene
Locus tag   V6U68_RS00350 Genome accession   NZ_CP145866
Coordinates   58437..59027 (+) Length   196 a.a.
NCBI ID   WP_037599413.1    Uniprot ID   -
Organism   Streptococcus salivarius strain KSS9     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 53437..64027
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  V6U68_RS00325 (V6U68_00325) - 54565..55020 (-) 456 WP_060972120.1 DUF3021 domain-containing protein -
  V6U68_RS00330 (V6U68_00330) - 55017..55454 (-) 438 WP_013989911.1 LytTR family DNA-binding domain-containing protein -
  V6U68_RS00335 (V6U68_00335) - 55633..55938 (+) 306 WP_155198552.1 hypothetical protein -
  V6U68_RS00340 (V6U68_00340) hexB 55990..57927 (+) 1938 WP_155198551.1 DNA mismatch repair endonuclease MutL Machinery gene
  V6U68_RS00345 (V6U68_00345) - 58058..58279 (+) 222 WP_037597288.1 hypothetical protein -
  V6U68_RS00350 (V6U68_00350) ruvA 58437..59027 (+) 591 WP_037599413.1 Holliday junction branch migration protein RuvA Machinery gene
  V6U68_RS00355 (V6U68_00355) - 59036..59590 (+) 555 WP_037599412.1 DNA-3-methyladenine glycosylase I -
  V6U68_RS00360 (V6U68_00360) cinA 59687..60952 (+) 1266 WP_410531710.1 competence/damage-inducible protein A Machinery gene
  V6U68_RS00365 (V6U68_00365) recA 60993..62132 (+) 1140 WP_002889600.1 recombinase RecA Machinery gene
  V6U68_RS00370 (V6U68_00370) spx 62302..62700 (+) 399 WP_002886328.1 transcriptional regulator Spx -

Sequence

Protein


Download         Length: 196 a.a.        Molecular weight: 21712.12 Da        Isoelectric Point: 5.6710

>NTDB_id=853795 V6U68_RS00350 WP_037599413.1 58437..59027(+) (ruvA) [Streptococcus salivarius strain KSS9]
MYDYIKGTLVKITAKYIVIEANGLGYIVTVANPYSFSDQMNQTIQVYLHQVIRDDAHLLFGFHTEDEKEVFLKLISVSGI
GPTTALAIVAVDDNQGLVAAIDNSDIKYLMKFPKIGKKTAQQMVLDLAGKFAELPTETTKTTPSQPEGNHQLDEAMEALL
ALGYKAAELKKIKAFFEGTNETAEQYIKSALKMLMK

Nucleotide


Download         Length: 591 bp        

>NTDB_id=853795 V6U68_RS00350 WP_037599413.1 58437..59027(+) (ruvA) [Streptococcus salivarius strain KSS9]
ATGTATGATTACATCAAGGGAACTCTAGTGAAAATTACTGCCAAGTATATTGTTATAGAAGCAAACGGCCTAGGTTATAT
TGTCACTGTAGCGAACCCATATAGTTTTTCTGACCAGATGAATCAGACTATCCAAGTCTACCTTCATCAGGTTATTAGGG
ATGACGCCCACCTTCTTTTTGGTTTCCATACTGAAGATGAAAAAGAAGTCTTCCTTAAGCTTATTTCAGTTTCTGGAATA
GGTCCGACGACTGCTCTAGCTATTGTTGCTGTAGATGATAATCAAGGCTTGGTGGCTGCCATTGATAATAGTGACATCAA
GTACCTGATGAAGTTTCCAAAGATTGGTAAAAAGACAGCCCAGCAAATGGTTTTGGACTTGGCAGGGAAATTTGCAGAGT
TACCAACAGAAACGACCAAGACGACACCAAGTCAACCTGAAGGAAATCATCAGTTGGATGAGGCTATGGAAGCTTTGCTT
GCTCTTGGTTATAAAGCTGCAGAACTTAAGAAAATCAAAGCCTTCTTCGAAGGTACTAATGAAACGGCAGAGCAATACAT
TAAATCAGCTCTTAAGATGTTGATGAAATGA

Domains

Predicted by InterProScan.

RuvA, C-terminal domain (RuvA_C)

(152-195)

RuvA N terminal domain (RuvA_N)

(1-61)

Helix-hairpin-helix domain (HHH_5)

(71-127)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ruvA Streptococcus pneumoniae TIGR4

65.5

100

0.668
  ruvA Streptococcus pneumoniae R6

65.5

100

0.668
  ruvA Streptococcus pneumoniae D39

65.5

100

0.668
  ruvA Bacillus subtilis subsp. subtilis str. 168

41.379

100

0.429