Detailed information    

insolico Bioinformatically predicted

Overview

Name   amiA   Type   Regulator
Locus tag   V6U67_RS08975 Genome accession   NZ_CP145865
Coordinates   1951097..1953067 (-) Length   656 a.a.
NCBI ID   WP_201061582.1    Uniprot ID   -
Organism   Streptococcus salivarius strain KSS8     
Function   internalize XIP (predicted from homology)   
Competence regulation

Genomic Context

Location: 1946097..1958067
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  V6U67_RS08960 (V6U67_08965) - 1946694..1947584 (-) 891 WP_002885882.1 hypothetical protein -
  V6U67_RS08965 (V6U67_08970) - 1947644..1948951 (-) 1308 WP_002885760.1 GHKL domain-containing protein -
  V6U67_RS08970 (V6U67_08975) gltX 1949406..1950860 (-) 1455 WP_021144664.1 glutamate--tRNA ligase -
  V6U67_RS08975 (V6U67_08980) amiA 1951097..1953067 (-) 1971 WP_201061582.1 peptide ABC transporter substrate-binding protein Regulator
  V6U67_RS08980 (V6U67_08985) rplA 1953248..1953937 (-) 690 WP_002885800.1 50S ribosomal protein L1 -
  V6U67_RS08985 (V6U67_08990) rplK 1954037..1954462 (-) 426 WP_002885648.1 50S ribosomal protein L11 -
  V6U67_RS08990 (V6U67_08995) - 1954634..1954987 (+) 354 WP_002885872.1 DUF3397 domain-containing protein -
  V6U67_RS08995 (V6U67_09000) - 1955083..1955580 (-) 498 WP_002886981.1 beta-class carbonic anhydrase -
  V6U67_RS09000 (V6U67_09005) - 1955731..1956426 (-) 696 WP_002885783.1 TIGR00266 family protein -
  V6U67_RS09005 (V6U67_09010) radA 1956512..1957873 (-) 1362 WP_080562498.1 DNA repair protein RadA Machinery gene

Sequence

Protein


Download         Length: 656 a.a.        Molecular weight: 73004.82 Da        Isoelectric Point: 4.9084

>NTDB_id=853772 V6U67_RS08975 WP_201061582.1 1951097..1953067(-) (amiA) [Streptococcus salivarius strain KSS8]
MKKSKVFLLAAVGLLSVGVLTACSSSSKTSGKTYNYVYGGDPATLDYVSTNKKNMTTAVSNGVDGLFENDQYGNLKPSVA
ENWSVSQDGLTYTYKIRKGVKWYTSDGEEYANVTAKDFVTGLKHAADTNSEAIYLLQNSVKGLNDYLSGANKDFSNVGIK
AVDDYTLQYTLSQPEPYWNSKLTYSVTWPVNEDFLKSKGKDFGKSTDPTSILYNGPYLLKSLTTKSSIEFTKNENYWDKD
NVYFDTVKLTYDDGTDQESLERNFTDGVYNLARLYPTSSNYSKVEKQYKDNIFYTQPGAAVEGVGINIDRQTYDHTSKEN
DQQKTSTKTALLNKDFRQALGFAIDRTNYAAQLNGKEGGSTAVRNIFVKPDFVQADGKDFGTMVMDQLPAYGDEWSGVNL
ADSQDGLYNPEKAKAEFAKAKEALQAEGVQFPIHLDVPVNQSNKIFVNQVQSLKQSIESALGKDNVVLDLHQLSTDDFYN
ITYSASNAAAEDWDLSVGVAWEPDYLDPSTYLDVLKTTNGENTKSFMGYDNPNSQAVEKVGLKEYDQLVDDASKETTDLT
ARYEKYAKAQAWLTDSALYIPTTTYNGAAAVISRIKPFSGAYAQAGDKGSTYYFKYLKSQDDIVTKKQYDSAYKDWLKEK
AKSNDKAQKDLAKHVK

Nucleotide


Download         Length: 1971 bp        

>NTDB_id=853772 V6U67_RS08975 WP_201061582.1 1951097..1953067(-) (amiA) [Streptococcus salivarius strain KSS8]
ATGAAAAAGAGTAAGGTATTTTTACTAGCAGCCGTAGGCCTATTATCTGTAGGTGTTTTAACGGCTTGCTCATCATCAAG
TAAGACATCTGGTAAGACTTATAATTATGTTTACGGTGGCGATCCTGCAACCCTAGACTATGTTTCTACAAATAAGAAAA
ACATGACGACAGCCGTTAGTAACGGTGTTGATGGTCTGTTTGAAAATGACCAATATGGGAATCTAAAACCTTCTGTCGCT
GAAAACTGGTCTGTTTCTCAAGATGGTTTGACATATACTTACAAGATTCGTAAGGGTGTCAAATGGTACACTTCAGACGG
CGAAGAGTATGCCAATGTAACAGCTAAAGACTTTGTAACAGGTCTTAAGCATGCTGCTGATACTAATTCTGAAGCGATTT
ATTTGCTACAAAACTCTGTTAAGGGCTTGAATGATTACCTGTCAGGTGCCAACAAGGACTTCTCAAATGTAGGTATCAAA
GCAGTTGATGATTACACTTTGCAATATACGCTTAGCCAACCAGAACCTTACTGGAATTCAAAATTGACCTACTCTGTTAC
TTGGCCTGTTAATGAAGATTTCTTGAAATCTAAAGGTAAAGACTTTGGTAAGTCAACAGACCCAACATCTATTCTTTATA
ACGGTCCATATCTTCTTAAATCTTTGACAACGAAATCTTCTATTGAGTTCACCAAGAATGAAAACTATTGGGATAAGGAT
AATGTCTATTTTGATACAGTTAAATTGACTTACGATGATGGTACAGACCAAGAATCCTTGGAACGTAACTTCACTGATGG
AGTCTATAACTTAGCTCGTCTATACCCAACTAGCTCAAACTATTCTAAAGTTGAAAAACAGTACAAAGACAATATTTTCT
ATACACAACCTGGAGCAGCTGTAGAAGGTGTCGGTATTAATATCGATCGTCAAACTTATGACCATACATCTAAAGAAAAT
GATCAACAAAAGACATCAACTAAGACAGCTCTTCTTAACAAAGATTTCCGTCAAGCATTAGGTTTTGCCATTGACCGTAC
AAATTACGCCGCACAACTTAACGGTAAGGAAGGTGGAAGCACTGCCGTTCGTAATATCTTTGTTAAACCAGACTTTGTTC
AAGCAGATGGTAAGGACTTCGGAACAATGGTGATGGATCAACTTCCAGCTTATGGTGATGAGTGGTCTGGTGTGAATCTT
GCAGATAGTCAAGATGGTCTTTATAATCCAGAAAAAGCTAAGGCTGAATTTGCTAAAGCCAAAGAAGCTCTTCAAGCAGA
AGGGGTTCAGTTCCCAATCCATTTGGATGTTCCTGTCAATCAGTCAAATAAAATCTTTGTGAACCAAGTGCAGTCACTTA
AACAATCTATTGAATCAGCTCTTGGAAAAGATAATGTTGTACTTGATCTTCATCAATTGTCAACTGATGATTTCTATAAC
ATTACCTACTCTGCTTCAAATGCAGCGGCAGAGGATTGGGACTTGTCAGTAGGTGTGGCTTGGGAGCCTGACTACCTTGA
TCCATCAACTTATCTTGATGTCTTGAAGACTACAAATGGTGAAAATACTAAATCTTTCATGGGTTATGACAATCCAAATA
GTCAAGCGGTTGAAAAAGTAGGTCTTAAAGAATATGACCAATTGGTTGATGATGCTTCTAAGGAAACAACAGACTTGACG
GCTCGTTATGAAAAATATGCAAAAGCTCAGGCATGGTTGACGGATAGTGCACTTTATATCCCAACGACTACTTATAACGG
TGCAGCCGCTGTAATTTCTCGTATTAAGCCATTCTCAGGAGCTTATGCTCAAGCCGGTGATAAAGGTTCTACATACTACT
TCAAGTATCTTAAATCTCAAGATGATATTGTGACTAAGAAACAATACGATTCAGCTTATAAAGATTGGCTTAAAGAAAAA
GCAAAATCTAATGACAAAGCTCAAAAAGATCTTGCCAAACACGTTAAGTAA

Domains

Predicted by InterProScan.

Bacterial extracellular solute-binding proteins, family 5 Middle (SBP_bac_5)

(75-521)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  amiA Streptococcus salivarius strain HSISS4

69.97

100

0.7
  amiA3 Streptococcus thermophilus LMD-9

68.493

100

0.686
  amiA3 Streptococcus thermophilus LMG 18311

67.732

100

0.678