Detailed information    

insolico Bioinformatically predicted

Overview

Name   uvrB   Type   Machinery gene
Locus tag   V6U67_RS07300 Genome accession   NZ_CP145865
Coordinates   1618752..1620743 (-) Length   663 a.a.
NCBI ID   WP_022495733.1    Uniprot ID   -
Organism   Streptococcus salivarius strain KSS8     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1613752..1625743
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  V6U67_RS07280 (V6U67_07290) - 1614582..1615691 (-) 1110 WP_022496614.1 aminotransferase -
  V6U67_RS07285 (V6U67_07295) - 1615935..1616732 (-) 798 WP_022496613.1 transporter substrate-binding domain-containing protein -
  V6U67_RS07290 (V6U67_07300) - 1616744..1617556 (-) 813 WP_022496612.1 transporter substrate-binding domain-containing protein -
  V6U67_RS07295 (V6U67_07305) - 1617772..1618236 (-) 465 WP_037611855.1 8-oxo-dGTP diphosphatase -
  V6U67_RS07300 (V6U67_07310) uvrB 1618752..1620743 (-) 1992 WP_022495733.1 excinuclease ABC subunit UvrB Machinery gene
  V6U67_RS07305 (V6U67_07315) - 1620733..1621359 (-) 627 WP_037611859.1 hypothetical protein -
  V6U67_RS07310 (V6U67_07320) - 1621428..1622363 (-) 936 WP_037611861.1 CPBP family intramembrane glutamic endopeptidase -
  V6U67_RS07315 (V6U67_07325) - 1622563..1624761 (+) 2199 WP_022496327.1 ABC transporter substrate-binding protein/permease -
  V6U67_RS07320 (V6U67_07330) - 1624761..1625501 (+) 741 WP_022496326.1 amino acid ABC transporter ATP-binding protein -

Sequence

Protein


Download         Length: 663 a.a.        Molecular weight: 76032.11 Da        Isoelectric Point: 4.5873

>NTDB_id=853750 V6U67_RS07300 WP_022495733.1 1618752..1620743(-) (uvrB) [Streptococcus salivarius strain KSS8]
MIDRKEDNQFHLVSKYEPSGDQPQAIEALVENIEGGEKAQILKGATGTGKTYTMSQVIQRVNKPTLVIAHNKTLAGQLYG
EFKEFFPDNAVEYFVSYYDFYQPEAYVPSSDTYIEKDSSVNDEIDKLRHSATSALLERNDVIVVASVSCIYGLGSPKEYA
DSAVSLRPGQEISRDKLLNDLVDIQFERNDIDFQRGKFRVRGDVVEIFPASRDEHAFRVEFFGDEIDRICEIESLTGRNL
GEVEHLVLFPATHFMTNEEHMEEAIKNIMEEMEAQVKQFEAEGKLIEAQRIRQRTEYDVEMLREMGYTNGVENYSRHMDG
RKEGEPPFTLLDFFPEDFLIMIDESHMTMGQIKGMYNGDQARKKMLVDYGFRLPSALDNRPLRREEFESHVHQIVYVSAT
PGDYEMEQTETVVEQIIRPTGLLDPEVEVRPTMGQMDDLLGEINARTEKGERVFVTTLTKKMAEDLTDYLKEMGVKVKYM
HSDIKTLERTEIIRDLRLGVFDVLIGINLLREGIDVPEVSLVAILDADKEGFLRNERGLIQTIGRAARNSEGHVIMYADK
ITESMQKAMDETARRREIQMAYNKEHGIVPQTIKKEIRDLISITKANEAEVAEDTVDYSAMNKKERQEAIKKLQKQMHEA
AELLDFELAAQIRDMVLELKSMD

Nucleotide


Download         Length: 1992 bp        

>NTDB_id=853750 V6U67_RS07300 WP_022495733.1 1618752..1620743(-) (uvrB) [Streptococcus salivarius strain KSS8]
ATGATAGATAGAAAAGAAGACAACCAATTCCATTTGGTTTCTAAATATGAACCTTCTGGGGACCAACCTCAGGCCATCGA
AGCCTTGGTGGAGAATATTGAAGGTGGTGAGAAAGCTCAAATCCTAAAGGGGGCGACAGGGACAGGTAAGACCTATACCA
TGAGTCAGGTCATTCAGCGCGTCAATAAACCAACCTTGGTTATCGCCCACAATAAAACTTTGGCAGGTCAGCTTTATGGA
GAGTTCAAGGAGTTTTTCCCAGACAATGCTGTAGAATACTTCGTTTCCTACTATGATTTCTATCAGCCAGAGGCCTATGT
ACCGTCATCAGATACCTATATTGAAAAAGATAGTTCTGTAAATGATGAAATTGATAAGCTCCGTCACTCAGCGACATCTG
CCCTCCTTGAGCGTAATGATGTTATCGTTGTGGCTTCCGTTTCTTGTATTTACGGTTTGGGTTCGCCAAAAGAATATGCC
GATTCAGCGGTTAGTCTTCGTCCAGGGCAAGAGATTTCTCGAGACAAGTTGCTCAATGACCTAGTTGATATCCAGTTTGA
GCGAAATGACATTGATTTCCAACGTGGGAAATTCCGTGTACGCGGTGATGTAGTCGAGATTTTCCCTGCCAGCCGCGATG
AACACGCCTTTCGTGTGGAATTTTTCGGTGATGAGATTGACCGTATCTGTGAGATTGAAAGTTTGACAGGACGCAATCTC
GGCGAGGTTGAGCACCTTGTTCTTTTCCCGGCGACTCACTTTATGACCAATGAAGAGCATATGGAAGAAGCCATCAAGAA
TATTATGGAAGAGATGGAAGCCCAGGTTAAGCAATTTGAAGCTGAGGGTAAGCTCATCGAGGCTCAACGTATCCGCCAGA
GGACTGAATACGATGTTGAAATGCTTCGTGAAATGGGCTACACCAATGGTGTTGAAAACTACTCACGACACATGGATGGA
CGTAAAGAAGGCGAGCCCCCCTTCACCTTGCTTGATTTCTTCCCAGAAGATTTCCTTATCATGATTGATGAAAGTCACAT
GACCATGGGTCAGATTAAGGGAATGTATAACGGGGACCAGGCCCGTAAGAAGATGTTGGTTGATTACGGTTTCCGTTTGC
CATCAGCGCTTGATAACCGTCCACTTCGACGTGAAGAATTTGAGAGTCATGTTCATCAGATTGTCTATGTGTCTGCCACT
CCAGGTGACTATGAGATGGAGCAAACTGAGACTGTCGTTGAGCAAATTATCCGTCCGACAGGGCTTCTTGATCCAGAAGT
CGAAGTGCGTCCAACCATGGGACAAATGGATGACCTCCTTGGTGAAATCAATGCCCGAACTGAAAAAGGCGAGCGTGTCT
TCGTAACCACTTTGACTAAGAAGATGGCTGAAGACTTGACTGACTATCTTAAGGAAATGGGTGTCAAGGTTAAATACATG
CACTCTGACATTAAGACTTTGGAACGTACTGAGATTATCCGTGACCTACGTTTGGGTGTCTTTGATGTTCTTATCGGGAT
TAACCTTCTCCGTGAAGGGATTGACGTTCCTGAAGTTAGTCTGGTTGCTATTTTGGATGCTGATAAGGAAGGCTTCCTTC
GTAATGAACGTGGGCTTATTCAAACGATTGGACGTGCTGCCCGAAATAGCGAAGGGCACGTTATCATGTATGCGGATAAG
ATTACGGAGTCTATGCAAAAAGCCATGGACGAAACAGCTCGTCGTCGTGAAATCCAGATGGCCTATAATAAGGAGCATGG
CATTGTTCCACAAACGATTAAGAAAGAAATTCGTGACCTTATTTCGATTACCAAGGCTAATGAAGCAGAAGTGGCAGAGG
ATACTGTGGACTACAGTGCCATGAACAAGAAAGAACGCCAAGAAGCCATCAAGAAACTTCAAAAACAAATGCATGAAGCA
GCAGAACTACTTGACTTTGAATTGGCGGCTCAAATCCGTGATATGGTGCTAGAACTGAAGAGTATGGATTAG

Domains

Predicted by InterProScan.

Ultra-violet resistance protein B (UvrB)

(556-598)

UvrB/uvrC motif (UVR)

(628-660)

Type III restriction enzyme, res subunit (ResIII)

(17-143)

UvrB interaction domain (UvrB_inter)

(164-254)

Helicase conserved C-terminal domain (Helicase_C)

(443-549)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  uvrB Streptococcus pneumoniae R6

86.124

100

0.861
  uvrB Streptococcus pneumoniae D39

86.124

100

0.861
  uvrB Streptococcus pneumoniae TIGR4

85.973

100

0.86