Detailed information    

insolico Bioinformatically predicted

Overview

Name   cipB   Type   Regulator
Locus tag   V6U66_RS08950 Genome accession   NZ_CP145864
Coordinates   1920064..1920303 (-) Length   79 a.a.
NCBI ID   WP_021152514.1    Uniprot ID   -
Organism   Streptococcus salivarius strain KSS7     
Function   indirect induction of ComX; activation of comRS system (predicted from homology)   
Competence regulation

Genomic Context

Location: 1915064..1925303
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  V6U66_RS08925 (V6U66_08915) - 1915332..1917599 (+) 2268 WP_221739272.1 Xaa-Pro dipeptidyl-peptidase -
  V6U66_RS08930 (V6U66_08920) - 1917878..1918174 (-) 297 WP_155213959.1 bacteriocin immunity protein -
  V6U66_RS08935 (V6U66_08925) - 1918339..1919265 (-) 927 WP_175062649.1 thioredoxin family protein -
  V6U66_RS08940 (V6U66_08930) - 1919452..1919631 (-) 180 WP_155213961.1 bacteriocin transporter -
  V6U66_RS08945 (V6U66_08935) - 1919660..1920052 (-) 393 WP_003094909.1 hypothetical protein -
  V6U66_RS08950 (V6U66_08940) cipB 1920064..1920303 (-) 240 WP_021152514.1 Blp family class II bacteriocin Regulator
  V6U66_RS08955 (V6U66_08945) - 1920889..1921143 (-) 255 WP_021152515.1 Blp family class II bacteriocin -
  V6U66_RS08960 (V6U66_08950) comE/blpR 1921737..1922477 (+) 741 WP_164332023.1 LytR/AlgR family response regulator transcription factor Regulator
  V6U66_RS08965 (V6U66_08955) - 1922792..1923808 (+) 1017 WP_339313535.1 sensor histidine kinase -
  V6U66_RS08970 (V6U66_08960) - 1923836..1923991 (-) 156 WP_021152520.1 ComC/BlpC family leader-containing pheromone/bacteriocin -
  V6U66_RS08975 (V6U66_08965) comB 1924008..1925231 (-) 1224 WP_049527520.1 HlyD family efflux transporter periplasmic adaptor subunit Regulator

Sequence

Protein


Download         Length: 79 a.a.        Molecular weight: 7695.63 Da        Isoelectric Point: 3.8735

>NTDB_id=853645 V6U66_RS08950 WP_021152514.1 1920064..1920303(-) (cipB) [Streptococcus salivarius strain KSS7]
MATQTIENFNTLDLETLASVEGGRVNWERWGVCGASVAVGASEGFSAAAGGTAFFIGPYAIGTGAVGAAIGGGVALLGC

Nucleotide


Download         Length: 240 bp        

>NTDB_id=853645 V6U66_RS08950 WP_021152514.1 1920064..1920303(-) (cipB) [Streptococcus salivarius strain KSS7]
ATGGCAACTCAAACAATTGAAAACTTTAACACCCTCGACCTTGAAACACTTGCTAGTGTTGAAGGAGGACGAGTCAATTG
GGAACGATGGGGAGTGTGTGGGGCCTCTGTCGCCGTAGGTGCTTCAGAAGGATTCTCTGCAGCTGCAGGTGGAACGGCTT
TCTTCATTGGACCGTATGCAATTGGAACTGGTGCAGTAGGTGCAGCTATTGGAGGCGGAGTAGCCTTACTTGGCTGTTAA

Domains

Predicted by InterProScan.

Bacteriocin class II with double-glycine leader peptide (Bacteriocin_IIc)

(7-74)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  cipB Streptococcus mutans UA159

52.459

77.215

0.405