Detailed information    

insolico Bioinformatically predicted

Overview

Name   sxy/tfoX   Type   Regulator
Locus tag   QOM25_RS21140 Genome accession   NZ_CP129497
Coordinates   4326470..4327096 (-) Length   208 a.a.
NCBI ID   WP_301510605.1    Uniprot ID   -
Organism   Enterobacter asburiae strain MP4m4     
Function   positive regulator of competence gene (predicted from homology)   
Competence regulation

Genomic Context

Location: 4321470..4332096
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QOM25_RS21125 (QOM25_21125) helD 4321707..4323761 (-) 2055 WP_301510601.1 DNA helicase IV -
  QOM25_RS21130 (QOM25_21130) - 4323885..4324331 (+) 447 WP_032658155.1 YccF domain-containing protein -
  QOM25_RS21135 (QOM25_21135) yccS 4324351..4326513 (+) 2163 WP_033145122.1 YccS family putative transporter -
  QOM25_RS21140 (QOM25_21140) sxy/tfoX 4326470..4327096 (-) 627 WP_301510605.1 TfoX/Sxy family DNA transformation protein Regulator
  QOM25_RS21145 (QOM25_21145) sulA 4327314..4327823 (+) 510 WP_301512950.1 SOS-induced cell division inhibitor SulA -
  QOM25_RS21150 (QOM25_21150) ompA 4328178..4329233 (+) 1056 WP_115504044.1 porin OmpA -
  QOM25_RS21155 (QOM25_21155) matP 4329297..4329749 (-) 453 WP_032658161.1 macrodomain Ter protein MatP -
  QOM25_RS21160 (QOM25_21160) - 4329936..4331696 (+) 1761 WP_301510608.1 Lon protease family protein -

Sequence

Protein


Download         Length: 208 a.a.        Molecular weight: 23888.43 Da        Isoelectric Point: 9.4588

>NTDB_id=853647 QOM25_RS21140 WP_301510605.1 4326470..4327096(-) (sxy/tfoX) [Enterobacter asburiae strain MP4m4]
MKKISYERIYKSQEYLSPLGEIHHRALFGGYTLAVDDAVFAMVSDGELYLRACEESAKYCVKNASSFLTLMKRGRPVLLN
YYRVDDGLWQDRERLLQLSSFALSAARKERYQRHQRNRLKDLPNLTFQLEVLLFEAGITNEETLRALGARASWLKIRAKN
KALSIKVLFALEGAIEGLHEAALPAGIRRELTEWFNALPEPQENHSSR

Nucleotide


Download         Length: 627 bp        

>NTDB_id=853647 QOM25_RS21140 WP_301510605.1 4326470..4327096(-) (sxy/tfoX) [Enterobacter asburiae strain MP4m4]
ATGAAAAAGATATCTTATGAACGGATTTATAAATCTCAGGAATACCTCTCCCCGTTGGGCGAGATTCATCACCGCGCGCT
GTTTGGAGGCTATACCCTCGCGGTGGATGATGCGGTTTTTGCCATGGTGTCTGATGGCGAGCTTTATCTTCGGGCCTGTG
AGGAGAGTGCGAAATACTGTGTAAAGAATGCTTCTTCATTCTTAACGTTGATGAAGCGTGGCCGCCCGGTGCTGCTCAAC
TATTATCGTGTGGATGACGGATTATGGCAGGACAGGGAGCGCTTGCTTCAGCTCTCCTCGTTTGCGCTCAGTGCGGCAAG
AAAAGAACGCTATCAGCGCCATCAGCGAAACCGACTCAAGGATCTGCCAAACCTGACCTTTCAGCTCGAAGTCTTGCTCT
TTGAAGCTGGAATCACTAATGAGGAAACGCTGCGGGCGCTGGGTGCCAGAGCGAGCTGGCTGAAGATACGGGCAAAGAAC
AAAGCGCTCAGTATTAAAGTTCTCTTCGCGCTGGAAGGGGCTATCGAGGGACTGCATGAGGCGGCACTCCCGGCAGGCAT
TCGCCGGGAGCTAACGGAGTGGTTTAATGCGCTGCCTGAGCCACAGGAGAATCACTCCTCCAGGTAG

Domains

Predicted by InterproScan.

TfoX N-terminal domain (TfoX_N)

(14-106)

TfoX C-terminal domain (TfoX_C)

(116-194)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sxy/tfoX Escherichia coli BW25113 strain K-12

58.128

97.596

0.567