Detailed information    

insolico Bioinformatically predicted

Overview

Name   uvrB   Type   Machinery gene
Locus tag   V6U66_RS02995 Genome accession   NZ_CP145864
Coordinates   570761..572752 (+) Length   663 a.a.
NCBI ID   WP_045772209.1    Uniprot ID   -
Organism   Streptococcus salivarius strain KSS7     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 565761..577752
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  V6U66_RS02975 (V6U66_02975) - 566008..566748 (-) 741 WP_002886797.1 amino acid ABC transporter ATP-binding protein -
  V6U66_RS02980 (V6U66_02980) - 566748..568946 (-) 2199 WP_002886798.1 ABC transporter substrate-binding protein/permease -
  V6U66_RS02985 (V6U66_02985) - 569145..570080 (+) 936 WP_138261846.1 CPBP family intramembrane glutamic endopeptidase -
  V6U66_RS02990 (V6U66_02990) - 570151..570771 (+) 621 WP_002886800.1 hypothetical protein -
  V6U66_RS02995 (V6U66_02995) uvrB 570761..572752 (+) 1992 WP_045772209.1 excinuclease ABC subunit UvrB Machinery gene
  V6U66_RS03000 (V6U66_03000) - 572765..573262 (+) 498 WP_045772210.1 GNAT family N-acetyltransferase -
  V6U66_RS03005 (V6U66_03005) - 573355..573978 (+) 624 WP_045772211.1 NAD(P)H-dependent oxidoreductase -
  V6U66_RS03010 (V6U66_03010) - 574002..574181 (+) 180 Protein_534 UvrB/UvrC motif-containing protein -
  V6U66_RS03015 (V6U66_03015) - 574509..574973 (+) 465 WP_013990196.1 8-oxo-dGTP diphosphatase -
  V6U66_RS03020 (V6U66_03020) - 575189..576001 (+) 813 WP_002886804.1 transporter substrate-binding domain-containing protein -
  V6U66_RS03025 (V6U66_03025) - 576013..576810 (+) 798 WP_002884336.1 transporter substrate-binding domain-containing protein -

Sequence

Protein


Download         Length: 663 a.a.        Molecular weight: 75984.05 Da        Isoelectric Point: 4.5858

>NTDB_id=853591 V6U66_RS02995 WP_045772209.1 570761..572752(+) (uvrB) [Streptococcus salivarius strain KSS7]
MIDRKEDNQFHLVSKYEPSGDQPQAIEALVDNIEGGEKAQILKGATGTGKTYTMSQVIQRVNKPTLVIAHNKTLAGQLYG
EFKEFFPDNAVEYFVSYYDFYQPEAYVPSSDTYIEKDSSVNDEIDKLRHSATSALLERNDVIVVASVSCIYGLGSPKEYA
DSAVSLRPGQEISRDKLLNDLVDIQFERNDIDFQRGKFRVRGDVVEIFPASRDEHAFRVEFFGDEIDRICEIESLTGRNL
GEVEHLVLFPATHFMTNEEHMEEAIKNIMEEMEAQVKQFEAEGKLIEAQRIRQRTEYDIEMLREMGYTNGVENYSRHMDG
RKEGEPPFTLLDFFPEDFLIMIDESHMTMGQIKGMYNGDQARKKMLVDYGFRLPSALDNRPLRREEFESHVHQIVYVSAT
PGDYEMEQTETVVEQIIRPTGLLDPEVEVRPTMGQMDDLLGEINARTEKGERVFVTTLTKKMAEDLTDYLKEMGVKVKYM
HSDIKTLERTEIIRDLRLGVFDVLIGINLLREGIDVPEVSLVAILDADKEGFLRNERGLIQTIGRAARNSEGHVIMYADK
ITESMQKAMDETARRREIQMAYNKEHGIVPQTIKKEIRDLISITKANEAEVAEDTVDYSAMNKKERQEAIKKLQKQMHEA
AELLDFELAAQIRDMVLEVKALD

Nucleotide


Download         Length: 1992 bp        

>NTDB_id=853591 V6U66_RS02995 WP_045772209.1 570761..572752(+) (uvrB) [Streptococcus salivarius strain KSS7]
ATGATAGATAGAAAAGAAGACAACCAATTCCATTTGGTTTCTAAATATGAACCTTCTGGGGATCAACCTCAGGCCATCGA
AGCCTTGGTGGATAATATTGAAGGTGGTGAGAAGGCTCAAATTCTAAAGGGGGCGACAGGGACAGGTAAGACCTATACCA
TGAGTCAGGTCATCCAGCGCGTCAATAAACCAACCTTGGTTATCGCCCACAATAAAACTTTGGCAGGTCAGCTTTATGGA
GAGTTCAAGGAGTTCTTCCCAGACAATGCTGTAGAATACTTCGTTTCCTACTACGATTTCTATCAGCCAGAGGCCTATGT
ACCGTCATCGGATACCTATATCGAAAAAGATAGCTCTGTAAATGATGAAATTGATAAGCTCCGTCACTCAGCGACATCGG
CCCTCCTTGAGCGTAATGATGTTATCGTTGTGGCTTCCGTTTCTTGTATTTACGGTTTGGGTTCGCCCAAAGAATATGCA
GATTCAGCGGTCAGCCTTCGTCCAGGCCAAGAGATTTCTCGAGACAAGTTGCTCAATGACCTAGTTGATATCCAGTTTGA
GCGAAATGACATTGATTTCCAACGTGGGAAATTCCGTGTGCGTGGCGATGTGGTCGAAATTTTTCCTGCCAGCCGCGATG
AACACGCCTTTCGTGTGGAATTTTTCGGTGATGAGATTGACCGCATCTGTGAGATTGAAAGTTTGACAGGACGCAATCTC
GGCGAGGTTGAGCACCTTGTTCTTTTCCCGGCGACTCACTTTATGACCAATGAAGAGCATATGGAAGAAGCCATCAAGAA
TATTATGGAAGAAATGGAAGCTCAGGTTAAGCAATTTGAAGCTGAGGGTAAGCTCATCGAGGCTCAACGTATCCGCCAAA
GGACAGAATACGATATTGAAATGCTTCGTGAAATGGGCTACACCAATGGTGTTGAAAACTACTCACGACACATGGATGGA
CGTAAAGAAGGCGAGCCACCCTTCACCTTGCTTGATTTCTTCCCAGAAGATTTCCTTATCATGATTGATGAAAGTCACAT
GACCATGGGTCAGATTAAGGGAATGTATAACGGGGACCAGGCTCGTAAGAAGATGTTGGTTGATTACGGTTTCCGTTTGC
CATCAGCGCTTGATAACCGTCCACTTCGACGTGAAGAATTTGAGAGTCATGTTCATCAGATTGTCTATGTGTCTGCCACT
CCAGGGGACTATGAGATGGAGCAAACTGAGACTGTCGTTGAGCAAATTATCCGACCGACAGGGCTTCTTGATCCAGAAGT
CGAAGTGCGTCCAACCATGGGACAAATGGATGACCTCCTTGGTGAAATCAATGCCCGAACTGAAAAAGGCGAGCGTGTCT
TTGTAACCACTTTGACTAAGAAGATGGCTGAAGACTTGACTGACTATCTCAAGGAAATGGGTGTCAAGGTCAAATACATG
CACTCTGACATTAAGACTTTGGAGCGTACTGAGATTATCCGTGACCTACGTTTGGGTGTCTTTGATGTTCTTATTGGGAT
TAACCTTCTTCGTGAGGGGATTGATGTTCCCGAGGTTAGTCTGGTTGCTATTTTGGATGCTGATAAGGAAGGCTTCCTTC
GTAATGAACGTGGGCTTATCCAAACGATTGGACGTGCTGCCCGAAATAGTGAAGGACACGTTATCATGTATGCGGATAAA
ATTACGGAGTCTATGCAAAAAGCCATGGATGAAACAGCTCGACGTCGTGAAATCCAGATGGCCTATAATAAGGAGCATGG
CATTGTTCCACAAACCATTAAGAAAGAAATTCGTGACCTTATTTCGATTACCAAGGCTAATGAAGCAGAAGTGGCAGAGG
ATACTGTGGACTACAGTGCTATGAACAAGAAAGAACGCCAAGAAGCTATCAAGAAACTTCAAAAACAAATGCATGAAGCA
GCAGAACTGCTTGACTTTGAATTGGCAGCTCAAATCCGTGATATGGTGTTGGAAGTTAAGGCTTTGGATTAG

Domains

Predicted by InterProScan.

Ultra-violet resistance protein B (UvrB)

(556-598)

UvrB/uvrC motif (UVR)

(628-661)

UvrB interaction domain (UvrB_inter)

(164-254)

Helicase conserved C-terminal domain (Helicase_C)

(443-549)

Type III restriction enzyme, res subunit (ResIII)

(17-143)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  uvrB Streptococcus pneumoniae R6

86.878

100

0.869
  uvrB Streptococcus pneumoniae D39

86.878

100

0.869
  uvrB Streptococcus pneumoniae TIGR4

86.727

100

0.867