Detailed information    

insolico Bioinformatically predicted

Overview

Name   rcrR   Type   Regulator
Locus tag   V6U66_RS02070 Genome accession   NZ_CP145864
Coordinates   390972..391415 (+) Length   147 a.a.
NCBI ID   WP_002885568.1    Uniprot ID   -
Organism   Streptococcus salivarius strain KSS7     
Function   regulate competence (predicted from homology)   
Competence regulation

Genomic Context

Location: 385972..396415
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  V6U66_RS02055 (V6U66_02060) gdhA 387041..388393 (+) 1353 WP_002885547.1 NADP-specific glutamate dehydrogenase -
  V6U66_RS02060 (V6U66_02065) - 388674..390215 (+) 1542 WP_206283473.1 hypothetical protein -
  V6U66_RS02065 (V6U66_02070) - 390374..390784 (+) 411 WP_014633541.1 peptide deformylase -
  V6U66_RS02070 (V6U66_02075) rcrR 390972..391415 (+) 444 WP_002885568.1 MarR family winged helix-turn-helix transcriptional regulator Regulator
  V6U66_RS02075 (V6U66_02080) rcrP 391419..393233 (+) 1815 WP_410534538.1 ABC transporter ATP-binding protein Regulator
  V6U66_RS02080 (V6U66_02085) rcrQ 393223..395001 (+) 1779 WP_049529161.1 ABC transporter ATP-binding protein Regulator
  V6U66_RS02085 (V6U66_02090) - 395109..395732 (+) 624 WP_002886697.1 GNAT family N-acetyltransferase -

Sequence

Protein


Download         Length: 147 a.a.        Molecular weight: 17181.67 Da        Isoelectric Point: 9.3639

>NTDB_id=853579 V6U66_RS02070 WP_002885568.1 390972..391415(+) (rcrR) [Streptococcus salivarius strain KSS7]
MHGKDTFSEFREFINTMESRVQELGKVHGVEHLAGPQGFAVKYLSDNQDKEIFIKDIEKRLCISKSVASNLVKRMEKNGF
VELVTSDKDKRYKYVHLTDLGKKKARDVKHFREAIHEQLLEGISKEDAETAFRVFHQIRMNLEKNKE

Nucleotide


Download         Length: 444 bp        

>NTDB_id=853579 V6U66_RS02070 WP_002885568.1 390972..391415(+) (rcrR) [Streptococcus salivarius strain KSS7]
ATGCATGGAAAAGATACTTTTAGTGAATTCAGAGAATTCATCAATACTATGGAATCTCGCGTGCAAGAGTTAGGAAAGGT
CCATGGGGTTGAGCATTTAGCTGGCCCGCAAGGATTTGCCGTCAAGTATTTGTCTGACAATCAAGATAAAGAAATCTTTA
TCAAAGACATTGAAAAAAGACTATGTATTTCTAAATCAGTGGCTAGTAATTTGGTCAAACGAATGGAAAAAAATGGTTTT
GTTGAGTTGGTGACATCGGACAAGGATAAACGCTACAAGTATGTTCATCTGACAGACTTAGGTAAAAAGAAAGCTCGAGA
TGTCAAACATTTTCGAGAGGCCATCCATGAACAGCTGTTAGAAGGTATTTCCAAAGAAGATGCTGAAACAGCTTTCCGTG
TCTTTCACCAAATTCGTATGAATTTAGAAAAAAATAAGGAGTAA

Domains

Predicted by InterProScan.

MarR family (MarR_2)

(37-91)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rcrR Streptococcus mutans UA159

58.156

95.918

0.558