Detailed information    

insolico Bioinformatically predicted

Overview

Name   comA   Type   Regulator
Locus tag   QYL89_RS09615 Genome accession   NZ_CP129462
Coordinates   2047085..2049235 (-) Length   716 a.a.
NCBI ID   WP_301409422.1    Uniprot ID   -
Organism   Staphylococcus pseudintermedius strain R41-1     
Function   processing and transport of ComC (predicted from homology)   
Competence regulation

Genomic Context

Location: 2042085..2054235
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QYL89_RS09600 recQ 2042234..2044015 (-) 1782 WP_014614539.1 DNA helicase RecQ -
  QYL89_RS09605 - 2044025..2045902 (-) 1878 WP_015728743.1 ABC-F family ATP-binding cassette domain-containing protein -
  QYL89_RS09610 - 2046014..2046829 (+) 816 WP_015728742.1 ZIP family metal transporter -
  QYL89_RS09615 comA 2047085..2049235 (-) 2151 WP_301409422.1 peptide cleavage/export ABC transporter Regulator
  QYL89_RS09620 - 2049360..2049542 (-) 183 WP_301409423.1 hypothetical protein -
  QYL89_RS09625 - 2049614..2049922 (-) 309 WP_202991150.1 DUF3884 family protein -
  QYL89_RS09630 - 2049994..2051283 (-) 1290 WP_203160591.1 glycosyltransferase -

Sequence

Protein


Download         Length: 716 a.a.        Molecular weight: 81689.47 Da        Isoelectric Point: 9.8385

>NTDB_id=853581 QYL89_RS09615 WP_301409422.1 2047085..2049235(-) (comA) [Staphylococcus pseudintermedius strain R41-1]
MKFSKRFYRAQVDSQDCGAAALAMILEFYGSHYSLDFLRRKLRTTVNGTTAYGLVQVADKLGFETVPIKADISLFEIDDV
QYPFIVHIKKNNNHFHYYVVIRCDKKYIYIADPDPVVNLTKMTYREFKEEWTGVTILLKPTSLYKPIKQDKVRLTSFIPL
LLKEKRLIIKIIIISILVNMINILGSYFMKSIIDFYIPQKLKTWVSMISMALIASYIMQQILSYLQKYFLILLVKTYSIN
ILSPYIKHLFRLPITFFETRRAGDILSRLNDANSITDALASTMISLFLDVTIVVGISIFLYYQSTILFVLILIIIPIYAV
IVFAFMNSFERKRIKSMEANATLSSYLMENITGMETIKALTCEKKCYKQIKYNFSNYYEKIFLLNKLNIKQNVLKKVVQL
ILNVSILWVGANLVIDNQISIGTLLVFNSLVVYFMNPIENIMNLQLKLQIAGVANNRLNEIFTVKSEFEKNKLDIKLNQN
SSKLIFSNISYGYGYEKEILTDINITIEHNSKVAFIGESGSGKTTLVKMMVSFFEPSKGKITLGGLDITNINKSVLRQQI
IYIPQQTYIFNGTILENLLLGVAKEVTQKDIDSAIKMAELKSFIDSLPLGLDSVLSSDFSALSGGQRQKIALARALLTNS
SILIMDEATSNIDILTERKIINNLMALNKTIIFISHNLNITQKVDKIFVLAKGKIIEEGSHEFLLKAKGYYSNLIN

Nucleotide


Download         Length: 2151 bp        

>NTDB_id=853581 QYL89_RS09615 WP_301409422.1 2047085..2049235(-) (comA) [Staphylococcus pseudintermedius strain R41-1]
ATGAAATTTTCAAAACGATTTTACCGTGCACAAGTAGATTCTCAAGATTGTGGCGCGGCAGCGCTCGCTATGATATTAGA
ATTTTACGGTTCTCACTATTCTTTGGATTTTCTGAGAAGAAAGTTAAGAACAACAGTAAATGGCACTACAGCATATGGTT
TGGTTCAGGTAGCAGATAAGTTAGGTTTTGAGACAGTTCCTATTAAAGCAGATATATCTTTGTTTGAAATTGATGATGTA
CAGTATCCTTTTATCGTTCATATTAAAAAAAATAACAATCATTTTCACTATTATGTTGTAATTAGATGTGATAAAAAGTA
TATCTATATAGCTGACCCTGACCCTGTTGTTAATTTAACAAAGATGACTTATAGGGAATTTAAAGAAGAGTGGACTGGAG
TTACAATATTATTAAAACCTACATCTTTATATAAACCTATAAAGCAAGATAAAGTTCGTTTAACTTCTTTTATACCTTTA
TTATTAAAAGAAAAAAGATTGATTATAAAAATAATAATCATTTCCATTTTAGTCAATATGATAAATATTTTAGGTTCATA
TTTTATGAAGTCAATTATTGATTTTTATATTCCCCAAAAGTTAAAAACATGGGTTAGTATGATTTCCATGGCTTTAATTG
CTTCTTACATTATGCAACAAATTCTTAGTTATTTGCAGAAATATTTTTTGATTTTATTAGTAAAGACATATTCTATAAAT
ATACTTTCACCATACATTAAACATTTGTTTAGATTACCTATTACTTTTTTTGAAACGAGAAGAGCAGGAGACATACTATC
AAGACTTAATGATGCAAATTCAATTACTGATGCTTTAGCTAGTACCATGATATCATTGTTTTTAGATGTTACAATAGTAG
TTGGCATATCTATCTTCCTGTATTATCAAAGTACTATTTTATTTGTATTAATATTAATTATCATTCCTATTTATGCCGTA
ATTGTTTTTGCTTTTATGAACTCTTTTGAACGGAAAAGAATAAAATCTATGGAGGCAAATGCTACTTTGTCTTCTTATTT
GATGGAAAATATAACAGGTATGGAGACGATAAAAGCACTGACATGTGAAAAGAAATGCTATAAGCAGATAAAATATAATT
TTTCAAATTATTACGAAAAAATATTCTTGTTAAACAAACTAAATATAAAGCAAAACGTTTTGAAAAAGGTTGTTCAATTA
ATATTAAATGTATCGATTTTATGGGTAGGCGCTAACCTAGTTATAGATAATCAAATCTCAATTGGAACTTTGCTTGTTTT
TAATTCATTAGTGGTTTACTTTATGAATCCAATAGAAAATATTATGAATTTACAGCTTAAATTACAAATAGCAGGTGTTG
CTAATAATCGATTGAATGAAATATTCACAGTTAAATCAGAATTTGAAAAGAATAAATTGGATATCAAATTGAACCAAAAC
TCAAGTAAACTTATATTTTCAAATATTTCATATGGATATGGGTACGAAAAAGAAATCCTTACAGATATTAATATAACAAT
AGAACATAATAGTAAAGTAGCCTTTATTGGAGAGTCTGGATCAGGTAAAACAACTTTGGTGAAAATGATGGTTAGTTTTT
TTGAACCTTCAAAGGGTAAAATAACACTAGGCGGATTGGACATAACAAATATCAATAAATCTGTTTTACGACAGCAGATT
ATATACATTCCACAACAAACTTACATTTTTAATGGAACTATACTTGAAAATCTTTTATTAGGGGTAGCTAAAGAGGTTAC
GCAAAAAGACATAGATAGTGCTATTAAAATGGCTGAACTAAAATCCTTTATTGATAGCTTACCACTTGGACTTGATAGTG
TATTAAGTTCTGATTTTTCTGCTTTGTCAGGAGGTCAGCGGCAGAAGATAGCTTTAGCAAGAGCACTATTAACAAATTCT
TCTATATTGATAATGGATGAAGCAACAAGTAATATTGATATACTCACGGAGAGAAAAATTATTAATAATTTGATGGCGTT
AAATAAAACTATTATATTTATCTCCCATAATCTAAATATAACTCAAAAAGTAGATAAAATATTTGTTTTAGCAAAAGGAA
AAATTATAGAAGAGGGCTCACATGAATTTTTATTAAAAGCAAAAGGTTACTATTCTAACTTAATTAATTAA

Domains

Predicted by InterproScan.

ABC transporter (ABC_tran)

(500-650)

ABC transporter transmembrane region (ABC_membrane)

(169-437)

Peptidase C39 family (Peptidase_C39)

(8-141)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comA Streptococcus mitis SK321

53.631

100

0.536
  comA Streptococcus mitis NCTC 12261

53.492

100

0.535
  comA Streptococcus gordonii str. Challis substr. CH1

53.492

100

0.535
  comA Streptococcus pneumoniae R6

53.073

100

0.531
  comA Streptococcus pneumoniae Rx1

53.073

100

0.531
  comA Streptococcus pneumoniae D39

53.073

100

0.531
  comA Streptococcus pneumoniae TIGR4

52.793

100

0.528
  comA/nlmT Streptococcus mutans UA159

49.028

100

0.493