Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilK   Type   Machinery gene
Locus tag   J3989_RS08125 Genome accession   NZ_AP024489
Coordinates   1671124..1671717 (-) Length   197 a.a.
NCBI ID   WP_096123528.1    Uniprot ID   -
Organism   Neisseria meningitidis strain NIID777     
Function   type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1666124..1676717
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  J3989_RS08105 (NMNIID777_15150) yaaA 1666967..1667746 (-) 780 WP_002223439.1 peroxide stress protein YaaA -
  J3989_RS08110 (NMNIID777_15160) dapC 1668009..1669196 (-) 1188 WP_002223438.1 succinyldiaminopimelate transaminase -
  J3989_RS08115 (NMNIID777_15170) dut 1669273..1669725 (-) 453 WP_002222651.1 dUTP diphosphatase -
  J3989_RS08120 (NMNIID777_15180) pilX 1670646..1671119 (-) 474 WP_002255852.1 PilX family type IV pilin Machinery gene
  J3989_RS08125 (NMNIID777_15190) pilK 1671124..1671717 (-) 594 WP_096123528.1 pilus assembly protein Machinery gene
  J3989_RS08130 (NMNIID777_15200) pilJ 1671696..1672685 (-) 990 WP_096123529.1 PilW family protein Machinery gene
  J3989_RS08135 (NMNIID777_15210) pilV 1672682..1673302 (-) 621 WP_096123540.1 type IV pilus modification protein PilV Machinery gene
  J3989_RS08140 (NMNIID777_15220) pilH 1673332..1674000 (-) 669 WP_096123530.1 Tfp pilus assembly protein FimT/FimU Machinery gene
  J3989_RS08145 (NMNIID777_15230) dnaB 1674309..1675715 (-) 1407 WP_002219448.1 replicative DNA helicase -
  J3989_RS08150 (NMNIID777_15240) - 1675877..1676464 (+) 588 WP_096123531.1 superoxide dismutase -

Sequence

Protein


Download         Length: 197 a.a.        Molecular weight: 21744.72 Da        Isoelectric Point: 8.0854

>NTDB_id=85357 J3989_RS08125 WP_096123528.1 1671124..1671717(-) (pilK) [Neisseria meningitidis strain NIID777]
MRKQNTLTGIPTSDGQRGFALFIVLMVMIVVAFLVVTAAQSYNTEQRISANESDRKLALSLAEAALREGELQVLDLEYDT
DSKVTFSENCGKGLCTAVNVRTNNDNEEAFDNIVVQGKPTVEAVKRFCPANSTDLCIDKKGMKYKKGTRSVSKSPRYIIE
YLGVKNGENVYRVTAKAWGKNANTVVVLQSYVSNNDE

Nucleotide


Download         Length: 594 bp        

>NTDB_id=85357 J3989_RS08125 WP_096123528.1 1671124..1671717(-) (pilK) [Neisseria meningitidis strain NIID777]
ATGCGCAAACAGAACACTTTGACGGGAATCCCGACTTCTGACGGACAGAGGGGGTTTGCACTGTTTATCGTGCTGATGGT
GATGATCGTCGTGGCTTTTTTGGTTGTAACTGCCGCGCAGTCTTACAATACCGAGCAGCGGATCAGTGCCAACGAATCAG
ACAGGAAATTGGCTTTGTCTTTGGCCGAGGCGGCTTTGCGGGAAGGCGAACTTCAGGTTTTGGATTTGGAATATGATACG
GACAGTAAGGTTACATTTAGCGAAAACTGTGGAAAAGGTCTGTGTACCGCAGTGAATGTGCGGACAAATAATGATAATGA
AGAGGCTTTTGACAATATCGTGGTGCAAGGCAAGCCCACCGTTGAGGCGGTGAAGCGTTTTTGCCCTGCAAATTCTACCG
ACCTGTGCATTGACAAGAAAGGGATGAAATATAAGAAAGGCACGAGAAGCGTCAGCAAATCACCGCGCTATATTATCGAA
TATTTGGGCGTGAAGAACGGAGAAAATGTTTATCGGGTTACTGCCAAGGCTTGGGGTAAGAATGCCAATACCGTGGTCGT
CCTTCAATCTTATGTAAGCAATAATGATGAGTAA

Domains

Predicted by InterproScan.

PilX N-terminal (PilX_N)

(17-67)

Type IV pilus assembly protein PilX C-term (PilX)

(92-192)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilK Neisseria gonorrhoeae MS11

85.644

100

0.878

Multiple sequence alignment