Detailed information    

insolico Bioinformatically predicted

Overview

Name   cytR   Type   Regulator
Locus tag   QUE29_RS20710 Genome accession   NZ_AP027258
Coordinates   4206299..4207291 (+) Length   330 a.a.
NCBI ID   WP_000224470.1    Uniprot ID   P0ACQ1
Organism   Escherichia coli strain JNE151685     
Function   promote competence gene expression (predicted from homology)   
Competence regulation

Genomic Context

Location: 4201299..4212291
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QUE29_RS20685 (JNE151685_39480) rbsD 4201423..4201842 (+) 420 WP_000715936.1 D-ribose pyranase -
  QUE29_RS20690 (JNE151685_39490) rbsA 4201850..4203355 (+) 1506 WP_000387770.1 ribose ABC transporter ATP-binding protein RbsA -
  QUE29_RS20695 (JNE151685_39500) rbsC 4203360..4204325 (+) 966 WP_000211858.1 ribose ABC transporter permease -
  QUE29_RS20700 (JNE151685_39510) rbsB 4204350..4205240 (+) 891 WP_001056273.1 ribose ABC transporter substrate-binding protein RbsB -
  QUE29_RS20705 (JNE151685_39520) rbsK 4205366..4206295 (+) 930 WP_001361088.1 ribokinase -
  QUE29_RS20710 (JNE151685_39530) cytR 4206299..4207291 (+) 993 WP_000224470.1 ribose operon transcriptional repressor RbsR Regulator
  QUE29_RS20715 (JNE151685_39540) mdtD 4207257..4208684 (-) 1428 WP_097753991.1 multidrug transporter subunit MdtD -
  QUE29_RS20720 (JNE151685_39550) yieP 4208707..4209399 (-) 693 WP_001131164.1 FadR/GntR family transcriptional regulator -

Sequence

Protein


Download         Length: 330 a.a.        Molecular weight: 36611.90 Da        Isoelectric Point: 5.2141

>NTDB_id=85356 QUE29_RS20710 WP_000224470.1 4206299..4207291(+) (cytR) [Escherichia coli strain JNE151685]
MATMKDVARLAGVSTSTVSHVINKDRFVSEAITAKVEAAIKELNYAPSALARSLKLNQTHTIGMLITASTNPFYSELVRG
VERSCFERGYSLVLCNTEGDEQRMNRNLETLMQKRVDGLLLLCTETHQPSREIMQRYPTVPTVMMDWAPFDGDSDLIQDN
SLLGGDLATQYLIDKGHTRIACITGPLDKTPARLRLEGYRAAMKRAGLNIPDGYEVTGDFEFNGGFDAMRQLLSHPLRPQ
AVFTGNDAMAVGVYQALYQAELQVPQDIAVIGYDDIELASFMTPPLTTIHQPKDELGELAIDVLIHRITQPTLQQQRLQL
TPILMERGSA

Nucleotide


Download         Length: 993 bp        

>NTDB_id=85356 QUE29_RS20710 WP_000224470.1 4206299..4207291(+) (cytR) [Escherichia coli strain JNE151685]
TTGGCTACAATGAAAGATGTTGCCCGTCTGGCGGGCGTTTCTACCTCAACAGTTTCTCACGTTATCAATAAAGATCGCTT
CGTCAGTGAAGCGATTACCGCCAAAGTTGAAGCGGCGATTAAAGAACTCAATTACGCGCCATCAGCTCTGGCGCGTAGCC
TCAAACTCAATCAAACACATACCATTGGCATGTTGATCACTGCCAGTACCAATCCTTTCTATTCAGAACTGGTGCGTGGC
GTTGAACGCAGCTGCTTCGAACGCGGTTATAGTCTCGTCCTTTGCAATACCGAAGGCGATGAACAGCGGATGAATCGCAA
TCTGGAAACGCTGATGCAAAAACGCGTTGATGGCTTACTGTTACTGTGCACCGAAACGCATCAGCCTTCGCGTGAAATCA
TGCAACGTTATCCGACAGTGCCTACCGTGATGATGGACTGGGCTCCGTTCGATGGCGACAGCGATCTTATTCAGGATAAC
TCGTTGCTGGGCGGAGACTTAGCAACGCAATATCTGATCGATAAAGGTCATACCCGTATCGCCTGTATTACCGGCCCGCT
GGATAAAACTCCGGCGCGCCTGCGGTTGGAAGGTTATCGGGCGGCGATGAAACGTGCGGGTCTCAACATTCCTGATGGCT
ATGAAGTCACTGGTGATTTTGAATTTAACGGCGGGTTTGACGCTATGCGCCAACTGCTATCACATCCGCTGCGTCCTCAG
GCCGTCTTTACCGGAAATGACGCTATGGCTGTTGGCGTTTACCAGGCGTTATATCAGGCAGAGTTACAGGTTCCGCAGGA
TATCGCGGTGATTGGCTATGACGATATCGAACTGGCAAGCTTTATGACGCCACCATTAACCACTATCCATCAACCAAAAG
ATGAACTGGGGGAGCTGGCGATTGATGTACTCATCCATCGGATAACCCAGCCAACTCTTCAGCAACAACGATTACAACTT
ACTCCGATTCTGATGGAACGCGGTTCGGCTTAG

Domains

Predicted by InterProScan.

Periplasmic binding protein-like domain (Peripla_BP_3)

(169-329)

Bacterial regulatory proteins, lacI family (LacI)

(3-48)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB P0ACQ1

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  cytR Vibrio parahaemolyticus RIMD 2210633

37.048

100

0.373
  cytR Vibrio cholerae C6706

39.088

93.03

0.364

Multiple sequence alignment