Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilX   Type   Machinery gene
Locus tag   J3989_RS08120 Genome accession   NZ_AP024489
Coordinates   1670646..1671119 (-) Length   157 a.a.
NCBI ID   WP_002255852.1    Uniprot ID   -
Organism   Neisseria meningitidis strain NIID777     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1665646..1676119
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  J3989_RS08105 (NMNIID777_15150) yaaA 1666967..1667746 (-) 780 WP_002223439.1 peroxide stress protein YaaA -
  J3989_RS08110 (NMNIID777_15160) dapC 1668009..1669196 (-) 1188 WP_002223438.1 succinyldiaminopimelate transaminase -
  J3989_RS08115 (NMNIID777_15170) dut 1669273..1669725 (-) 453 WP_002222651.1 dUTP diphosphatase -
  J3989_RS08120 (NMNIID777_15180) pilX 1670646..1671119 (-) 474 WP_002255852.1 PilX family type IV pilin Machinery gene
  J3989_RS08125 (NMNIID777_15190) pilK 1671124..1671717 (-) 594 WP_096123528.1 pilus assembly protein Machinery gene
  J3989_RS08130 (NMNIID777_15200) pilJ 1671696..1672685 (-) 990 WP_096123529.1 PilW family protein Machinery gene
  J3989_RS08135 (NMNIID777_15210) pilV 1672682..1673302 (-) 621 WP_096123540.1 type IV pilus modification protein PilV Machinery gene
  J3989_RS08140 (NMNIID777_15220) pilH 1673332..1674000 (-) 669 WP_096123530.1 Tfp pilus assembly protein FimT/FimU Machinery gene
  J3989_RS08145 (NMNIID777_15230) dnaB 1674309..1675715 (-) 1407 WP_002219448.1 replicative DNA helicase -

Sequence

Protein


Download         Length: 157 a.a.        Molecular weight: 17514.22 Da        Isoelectric Point: 9.1580

>NTDB_id=85356 J3989_RS08120 WP_002255852.1 1670646..1671119(-) (pilX) [Neisseria meningitidis strain NIID777]
MEQKGFTLIEMMIVVAILGIISVIAIPSYQSYIEKGYQSQLYTEMVGINNISKQFILKNPLDDNQTIKSKLEIFVSGYKM
NPKIAEKYNVSVHFVNKEKPRAYSLVGVPKTGTGYTLSVWMNSVGDGYKCRDKASAEAYSETLSADAGCEAFSNRKK

Nucleotide


Download         Length: 474 bp        

>NTDB_id=85356 J3989_RS08120 WP_002255852.1 1670646..1671119(-) (pilX) [Neisseria meningitidis strain NIID777]
ATGGAACAAAAAGGGTTTACATTGATTGAGATGATGATAGTCGTCGCGATACTCGGCATTATCAGCGTCATTGCCATACC
TTCTTATCAAAGTTATATTGAAAAAGGCTATCAGTCCCAGCTTTATACGGAGATGGTCGGTATCAACAATATTTCCAAAC
AGTTTATTTTGAAAAATCCCCTGGACGATAATCAGACCATCAAGAGCAAACTGGAAATATTTGTCTCAGGCTATAAGATG
AATCCGAAAATTGCCGAAAAATATAATGTTTCGGTGCATTTTGTCAATAAGGAAAAACCAAGGGCATACAGCTTGGTCGG
CGTTCCAAAGACGGGGACGGGTTATACTTTGTCGGTATGGATGAACAGCGTGGGCGACGGATACAAATGCCGTGATAAGG
CTTCTGCCGAAGCCTATTCGGAGACCTTGTCCGCAGATGCCGGCTGTGAAGCCTTCTCTAATCGTAAAAAATAA

Domains

Predicted by InterproScan.

Prokaryotic N-terminal methylation motif (N_methyl)

(3-25)

Minor type IV pilin, PilX (Pilin_PilX)

(31-157)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilX Neisseria meningitidis 8013

95.541

100

0.955
  pilL Neisseria gonorrhoeae MS11

86.624

100

0.866

Multiple sequence alignment