Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilH   Type   Machinery gene
Locus tag   J3989_RS08140 Genome accession   NZ_AP024489
Coordinates   1673332..1674000 (-) Length   222 a.a.
NCBI ID   WP_096123530.1    Uniprot ID   -
Organism   Neisseria meningitidis strain NIID777     
Function   type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1668332..1679000
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  J3989_RS08115 (NMNIID777_15170) dut 1669273..1669725 (-) 453 WP_002222651.1 dUTP diphosphatase -
  J3989_RS08120 (NMNIID777_15180) pilX 1670646..1671119 (-) 474 WP_002255852.1 PilX family type IV pilin Machinery gene
  J3989_RS08125 (NMNIID777_15190) pilK 1671124..1671717 (-) 594 WP_096123528.1 pilus assembly protein Machinery gene
  J3989_RS08130 (NMNIID777_15200) pilJ 1671696..1672685 (-) 990 WP_096123529.1 PilW family protein Machinery gene
  J3989_RS08135 (NMNIID777_15210) pilV 1672682..1673302 (-) 621 WP_096123540.1 type IV pilus modification protein PilV Machinery gene
  J3989_RS08140 (NMNIID777_15220) pilH 1673332..1674000 (-) 669 WP_096123530.1 Tfp pilus assembly protein FimT/FimU Machinery gene
  J3989_RS08145 (NMNIID777_15230) dnaB 1674309..1675715 (-) 1407 WP_002219448.1 replicative DNA helicase -
  J3989_RS08150 (NMNIID777_15240) - 1675877..1676464 (+) 588 WP_096123531.1 superoxide dismutase -
  J3989_RS08155 (NMNIID777_15250) - 1677715..1678224 (-) 510 WP_002227434.1 isoprenylcysteine carboxyl methyltransferase family protein -
  J3989_RS08160 (NMNIID777_15260) - 1678554..1678886 (-) 333 WP_002227435.1 hypothetical protein -

Sequence

Protein


Download         Length: 222 a.a.        Molecular weight: 24810.23 Da        Isoelectric Point: 9.3779

>NTDB_id=85360 J3989_RS08140 WP_096123530.1 1673332..1674000(-) (pilH) [Neisseria meningitidis strain NIID777]
MCTRKQQGFTLTELLIVMAIAAIMAMIALPNMSQWIASRRIASHAERIANLLRFSRGEAVRLNLPVYICPVQVKKDGTAN
NKCDSGKKEQGMLAFGDKNGNKGYDNDTADVLLRSVVLNDDINDKRINYAFNHIAFGKTQPTADRVVWTFNQNGTFGYTN
DQHLTSQSSFSYSDGYIQIVLTDARAVSDADKKFRSAVVLIDSSGRVEVCPRNDRRTVCQYK

Nucleotide


Download         Length: 669 bp        

>NTDB_id=85360 J3989_RS08140 WP_096123530.1 1673332..1674000(-) (pilH) [Neisseria meningitidis strain NIID777]
ATGTGTACACGAAAACAACAAGGTTTCACGCTAACAGAGCTGCTCATCGTGATGGCCATTGCAGCCATTATGGCGATGAT
AGCCCTCCCCAATATGAGCCAATGGATTGCATCCCGCCGCATTGCCAGTCACGCGGAGCGGATTGCCAACCTTTTGCGTT
TCTCCAGGGGCGAAGCCGTCCGGCTCAATCTCCCTGTCTATATCTGTCCTGTTCAAGTTAAAAAAGACGGTACGGCCAAC
AATAAATGTGACTCCGGCAAGAAGGAGCAGGGAATGTTGGCTTTCGGCGACAAAAACGGCAATAAGGGATATGACAATGA
TACGGCGGATGTTCTTCTCCGCAGTGTGGTATTGAATGATGATATCAATGATAAGCGGATTAATTATGCCTTCAACCATA
TCGCTTTCGGTAAGACTCAGCCGACCGCTGACCGCGTTGTTTGGACGTTCAATCAAAACGGGACGTTCGGTTATACGAAC
GACCAGCATCTTACAAGCCAATCCAGCTTTTCTTATTCCGACGGTTATATCCAAATCGTGCTGACAGATGCGAGAGCAGT
TTCAGATGCCGATAAGAAATTCCGTTCGGCGGTGGTTTTGATTGACAGCAGCGGCAGGGTTGAGGTTTGTCCTAGAAACG
ATAGGCGTACCGTATGCCAATATAAATGA

Domains

Predicted by InterproScan.

Prokaryotic N-terminal methylation motif (N_methyl)

(4-29)

Type II transport protein GspH (GspH)

(44-205)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilH Neisseria gonorrhoeae MS11

84.163

99.55

0.838

Multiple sequence alignment