Detailed information    

insolico Bioinformatically predicted

Overview

Name   rarA   Type   Machinery gene
Locus tag   V6U65_RS09680 Genome accession   NZ_CP145863
Coordinates   2078169..2079437 (-) Length   422 a.a.
NCBI ID   WP_073686023.1    Uniprot ID   -
Organism   Streptococcus salivarius strain KSS6     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 2073169..2084437
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  V6U65_RS09640 (V6U65_09635) - 2073727..2074242 (-) 516 WP_155127159.1 DUF308 domain-containing protein -
  V6U65_RS09645 (V6U65_09640) - 2074460..2074972 (-) 513 WP_410532403.1 helix-turn-helix domain-containing protein -
  V6U65_RS09650 (V6U65_09645) - 2075181..2075363 (+) 183 WP_311043116.1 hypothetical protein -
  V6U65_RS09655 (V6U65_09650) - 2075409..2076386 (+) 978 WP_048788676.1 replication initiation protein -
  V6U65_RS09660 (V6U65_09655) - 2076398..2076586 (+) 189 WP_000369785.1 DUF3173 domain-containing protein -
  V6U65_RS09665 (V6U65_09660) - 2076588..2077727 (+) 1140 WP_049482803.1 site-specific integrase -
  V6U65_RS09680 (V6U65_09675) rarA 2078169..2079437 (-) 1269 WP_073686023.1 replication-associated recombination protein A Machinery gene
  V6U65_RS09685 (V6U65_09680) rpmB 2079607..2079795 (+) 189 WP_002885786.1 50S ribosomal protein L28 -
  V6U65_RS09690 (V6U65_09685) - 2079922..2080188 (+) 267 WP_002885737.1 IreB family regulatory phosphoprotein -
  V6U65_RS09695 (V6U65_09690) ruvX 2080188..2080607 (+) 420 WP_002887078.1 Holliday junction resolvase RuvX -
  V6U65_RS09700 (V6U65_09695) - 2080713..2081018 (+) 306 WP_002887079.1 DUF1292 domain-containing protein -
  V6U65_RS09705 (V6U65_09700) - 2081231..2082877 (+) 1647 WP_410532406.1 hypothetical protein -

Sequence

Protein


Download         Length: 422 a.a.        Molecular weight: 46554.01 Da        Isoelectric Point: 6.0722

>NTDB_id=853554 V6U65_RS09680 WP_073686023.1 2078169..2079437(-) (rarA) [Streptococcus salivarius strain KSS6]
MPDNLALRMRPRTISEVIGQKHLVGEGKIIRRMVEANMLSSMILYGPPGIGKTSIASAIAGTTKFAFRTFNATVDSKKRL
QEIAEEAKFSGGLVLLLDEIHRLDKAKQDFLLPLLENGNIIMIGATTENPFFSVTPAIRSRVQIFELEPLSNEDIKEAIL
SVLEAKERGFDFDVQLDDDALDFIATATNGDLRSAYNSLDLAVMSTPASEDGLRHITLDTVENSLQRSYITMDKDGDGHY
DVLSALQKSIRGSDVNASLHYAARLVEAGDLPSLARRLTVIAYEDIGLANPDAQVHTVTALEAAQKVGFPEARILIANVV
VDLALSPKSNSAYMAMDAALADLRKSGNLPIPRHLRDGHYAGSKELGNAQDYKYPHAYPEKWVKQQYLPDKLRGVNYFQP
NETGKYERALGANKERIDKLSR

Nucleotide


Download         Length: 1269 bp        

>NTDB_id=853554 V6U65_RS09680 WP_073686023.1 2078169..2079437(-) (rarA) [Streptococcus salivarius strain KSS6]
ATGCCAGATAATCTTGCTCTACGCATGCGTCCACGTACAATTTCAGAGGTGATTGGTCAGAAGCATCTGGTTGGTGAAGG
TAAAATTATTCGCCGTATGGTAGAAGCGAATATGCTATCGTCAATGATTCTCTACGGGCCACCAGGAATCGGGAAGACCT
CAATAGCTAGTGCTATTGCAGGAACAACAAAATTTGCTTTTAGAACCTTTAATGCTACAGTTGATAGCAAGAAACGCCTG
CAGGAAATTGCGGAAGAGGCTAAATTTTCAGGTGGCTTAGTTCTGCTCCTAGATGAGATTCATCGTTTAGATAAAGCTAA
ACAAGACTTTTTATTACCACTCTTAGAGAATGGTAATATTATCATGATTGGGGCTACAACGGAGAATCCGTTTTTTTCTG
TAACACCAGCCATCCGTAGTCGTGTACAAATATTTGAGTTGGAACCACTCTCTAACGAGGATATTAAGGAAGCTATCCTA
AGTGTTTTAGAGGCCAAGGAGCGTGGTTTTGACTTTGATGTCCAGTTAGATGATGATGCTCTAGATTTTATTGCTACAGC
TACTAATGGTGATCTACGTTCGGCTTATAATTCGTTGGATCTAGCTGTCATGTCGACGCCAGCTTCAGAAGATGGGCTTC
GCCATATTACTTTAGATACAGTGGAAAATAGTTTACAACGTAGCTATATCACCATGGATAAAGACGGTGATGGACACTAT
GATGTGCTCTCTGCTTTGCAAAAATCTATTCGAGGCTCTGATGTTAATGCCAGTCTTCATTATGCAGCGCGTTTGGTTGA
AGCAGGAGATCTCCCTAGTCTAGCGCGGCGTTTGACTGTGATTGCATACGAGGATATTGGTTTAGCTAATCCTGATGCGC
AAGTTCACACGGTTACAGCTTTGGAAGCTGCACAGAAAGTAGGTTTCCCAGAGGCGCGTATTTTGATAGCCAATGTAGTT
GTTGACTTAGCTTTATCTCCTAAGTCGAATTCGGCTTATATGGCTATGGATGCTGCCTTGGCAGACCTTAGAAAATCAGG
AAATTTACCGATTCCTCGTCATTTGAGAGATGGACACTATGCTGGAAGCAAGGAACTGGGCAATGCACAAGATTACAAGT
ATCCCCATGCTTATCCTGAAAAGTGGGTCAAGCAACAATACCTTCCGGATAAATTAAGAGGTGTGAATTATTTCCAACCC
AATGAAACCGGGAAATATGAAAGAGCTCTTGGAGCTAATAAAGAACGGATTGATAAGTTATCTAGGTAA

Domains

Predicted by InterProScan.

AAA C-terminal domain (AAA_assoc_2)

(173-251)

MgsA AAA+ ATPase C terminal (MgsA_C)

(252-415)

ATPase family associated with various cellular activities (AAA) (AAA)

(42-144)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rarA Bacillus subtilis subsp. subtilis str. 168

60.143

99.289

0.597