Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssbA   Type   Machinery gene
Locus tag   QYL87_RS12130 Genome accession   NZ_CP129461
Coordinates   2588395..2588901 (-) Length   168 a.a.
NCBI ID   WP_014614920.1    Uniprot ID   A0A161W350
Organism   Staphylococcus pseudintermedius strain N13-1     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 2583395..2593901
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QYL87_RS12110 - 2584311..2584442 (-) 132 WP_015728521.1 hypothetical protein -
  QYL87_RS12115 - 2584612..2586603 (+) 1992 WP_301405065.1 catalase -
  QYL87_RS12120 - 2586817..2587908 (-) 1092 WP_096636732.1 Abi family protein -
  QYL87_RS12125 rpsR 2588099..2588341 (-) 243 WP_014614919.1 30S ribosomal protein S18 -
  QYL87_RS12130 ssbA 2588395..2588901 (-) 507 WP_014614920.1 single-stranded DNA-binding protein Machinery gene
  QYL87_RS12135 rpsF 2588924..2589220 (-) 297 WP_014614921.1 30S ribosomal protein S6 -
  QYL87_RS12140 sbi 2589557..2591083 (+) 1527 WP_127505310.1 Ig-binding surface protein Sbi/SpsK -
  QYL87_RS12145 - 2591137..2591946 (-) 810 WP_015728517.1 ABC transporter permease subunit -
  QYL87_RS12150 - 2591939..2592874 (-) 936 WP_096636734.1 ABC transporter ATP-binding protein -
  QYL87_RS12430 - 2593163..2593249 (-) 87 WP_080552884.1 DUF933 domain-containing protein -

Sequence

Protein


Download         Length: 168 a.a.        Molecular weight: 18738.42 Da        Isoelectric Point: 5.1957

>NTDB_id=853554 QYL87_RS12130 WP_014614920.1 2588395..2588901(-) (ssbA) [Staphylococcus pseudintermedius strain N13-1]
MLNRVVLVGRLTKDPEYRTTPSGVSVATFTLAVNRTFTNAQGEREADFINCVVFRKQAENVNNFLFKGSLAGVDGRLQSR
SYENQEGRRVFVTEVVCDSVQFLEPKSQNQRHANQNQGNQFDSYGQGFGGQQQGQNSSYQNNHQQPANDNPFANANGPID
ISDDDLPF

Nucleotide


Download         Length: 507 bp        

>NTDB_id=853554 QYL87_RS12130 WP_014614920.1 2588395..2588901(-) (ssbA) [Staphylococcus pseudintermedius strain N13-1]
ATGCTTAATAGAGTCGTATTAGTAGGTCGCTTAACTAAAGATCCAGAATACAGAACGACACCCTCAGGCGTAAGTGTAGC
GACATTTACCTTAGCGGTTAATCGTACATTTACGAATGCGCAAGGGGAACGTGAAGCAGACTTCATTAACTGCGTTGTTT
TCCGTAAACAAGCAGAAAATGTAAACAACTTTTTGTTTAAAGGAAGTCTCGCTGGCGTTGACGGTCGCTTACAATCACGC
AGTTACGAAAACCAAGAAGGCCGACGTGTATTCGTCACTGAAGTGGTATGTGATAGTGTTCAATTCCTTGAGCCAAAATC
ACAAAACCAACGTCACGCGAATCAAAACCAAGGTAATCAATTCGATAGCTACGGTCAAGGATTCGGTGGACAACAACAAG
GCCAAAATTCGTCTTATCAAAACAATCATCAGCAACCAGCTAACGATAACCCATTTGCGAATGCGAACGGTCCTATCGAT
ATTAGCGATGATGATTTACCATTCTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(2-103)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A161W350

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssbA Bacillus subtilis subsp. subtilis str. 168

64.773

100

0.679
  ssb Latilactobacillus sakei subsp. sakei 23K

56.14

100

0.571
  ssbB Bacillus subtilis subsp. subtilis str. 168

58.182

65.476

0.381