Detailed information    

insolico Bioinformatically predicted

Overview

Name   recG/mmsA   Type   Machinery gene
Locus tag   V6U65_RS08565 Genome accession   NZ_CP145863
Coordinates   1876562..1878580 (-) Length   672 a.a.
NCBI ID   WP_410532364.1    Uniprot ID   -
Organism   Streptococcus salivarius strain KSS6     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1871562..1883580
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  V6U65_RS08535 (V6U65_08530) - 1872806..1873774 (+) 969 WP_410532363.1 asparaginase -
  V6U65_RS08540 (V6U65_08535) - 1873778..1873921 (+) 144 WP_013991161.1 hypothetical protein -
  V6U65_RS08545 (V6U65_08540) - 1873972..1874184 (-) 213 WP_002884695.1 helix-turn-helix domain-containing protein -
  V6U65_RS08550 (V6U65_08545) - 1874194..1874802 (-) 609 WP_175063843.1 DUF2975 domain-containing protein -
  V6U65_RS08555 (V6U65_08550) - 1874993..1875430 (-) 438 WP_014635028.1 hypothetical protein -
  V6U65_RS08560 (V6U65_08555) - 1876044..1876550 (-) 507 WP_014635029.1 hypothetical protein -
  V6U65_RS08565 (V6U65_08560) recG/mmsA 1876562..1878580 (-) 2019 WP_410532364.1 ATP-dependent DNA helicase RecG Machinery gene
  V6U65_RS08570 (V6U65_08565) alr 1878713..1879816 (-) 1104 WP_410532365.1 alanine racemase -
  V6U65_RS08575 (V6U65_08570) acpS 1879844..1880197 (-) 354 WP_410532366.1 holo-ACP synthase -
  V6U65_RS08580 (V6U65_08575) - 1880200..1881231 (-) 1032 WP_201552305.1 3-deoxy-7-phosphoheptulonate synthase -
  V6U65_RS08585 (V6U65_08580) - 1881316..1882347 (-) 1032 WP_014632614.1 3-deoxy-7-phosphoheptulonate synthase -

Sequence

Protein


Download         Length: 672 a.a.        Molecular weight: 75161.46 Da        Isoelectric Point: 5.9686

>NTDB_id=853533 V6U65_RS08565 WP_410532364.1 1876562..1878580(-) (recG/mmsA) [Streptococcus salivarius strain KSS6]
MIQLDSPIADLKGFGPKSAEKFTKLDLHTVGDLLLYFPFRYEDFKSKSIFELMDGEKAVITGTVVTPANVQYYGFKRNRL
SFKIKQGEAVIAISFFNQPYLVDKIEMGAEVAIFGKWDQKKSAVTGMKVLAQVEDDMQPVYHVAQGVSQAQLIKAIKAAF
DSGALNLLEESLPQVLMDKYRLMGRQEAVRAMHFPKDLAEYKQALRRTKFEELFYFQMNLQVLKAENKSETNGLAIAYDE
AKIKAKIAALPFPLTEAQQRSLSEILADMKSGAHMNRLLQGDVGSGKTVIASLAMYGAYTAGLQSALMVPTEILAEQHYQ
SLQGLFPELEVVLLTSGMKAADKKVALSKIESGEAQMIVGTHSLIQDAVTYHRLGLVITDEQHRFGVNQRRIFREKGDNP
DVLMMTATPIPRTLAITAFGEMDVSIIDQMPAGRKPIITRWVKHEQLDTVLTWIKGELEKDAQVYFISPLIEESEALDLK
NAVALHQELTEFFGDSATVALMHGRMKNDEKDQIMQDFKNKKSQILVSTTVIEVGVNVPNATVMVIMDADRFGLSQLHQL
RGRVGRGDKQSYCVLVANPKNDTGKKRMQAMCETTDGFVLAEEDLKMRGSGEIFGTRQSGIPEFQVADIVEDYNILEEAR
RVASQIVSDPNWRENPDWQVLGAHLRSQGEFD

Nucleotide


Download         Length: 2019 bp        

>NTDB_id=853533 V6U65_RS08565 WP_410532364.1 1876562..1878580(-) (recG/mmsA) [Streptococcus salivarius strain KSS6]
ATGATTCAACTAGATTCACCGATTGCGGATTTGAAAGGTTTTGGTCCTAAGTCCGCTGAAAAATTTACCAAATTAGATTT
GCACACGGTTGGGGACCTCTTGCTTTATTTTCCTTTCCGATATGAAGATTTTAAGAGTAAGTCTATCTTTGAACTGATGG
ATGGCGAAAAGGCAGTTATTACGGGAACCGTGGTAACCCCTGCCAATGTGCAGTATTATGGCTTTAAACGGAATCGTCTG
AGTTTTAAAATCAAGCAAGGAGAAGCAGTGATTGCCATTAGTTTCTTCAACCAGCCTTATCTTGTAGACAAGATTGAGAT
GGGGGCAGAAGTCGCTATTTTTGGCAAATGGGACCAGAAGAAGTCTGCAGTAACTGGTATGAAAGTGTTGGCTCAAGTTG
AGGACGATATGCAGCCAGTATACCATGTGGCCCAGGGTGTTAGTCAGGCCCAGCTGATAAAGGCTATAAAGGCAGCCTTT
GATAGTGGAGCTCTTAATTTGTTGGAGGAGAGTCTTCCACAGGTGCTTATGGACAAGTATCGTCTCATGGGTCGTCAAGA
GGCTGTGCGTGCCATGCATTTTCCGAAAGATTTGGCTGAATATAAGCAGGCCCTACGTAGGACCAAGTTTGAGGAGCTCT
TTTATTTCCAGATGAACTTACAGGTGCTCAAGGCTGAAAATAAGTCCGAAACCAATGGTCTAGCAATTGCTTACGATGAA
GCTAAAATCAAAGCTAAAATTGCAGCTTTACCATTCCCCTTGACAGAAGCCCAACAGCGCAGTTTGTCGGAAATCCTAGC
TGATATGAAATCTGGGGCTCATATGAACCGTCTTTTGCAAGGAGATGTGGGTTCAGGGAAAACAGTTATCGCTAGCCTGG
CCATGTATGGGGCTTATACGGCAGGATTGCAGTCTGCCCTCATGGTACCGACGGAAATCTTAGCGGAGCAGCACTATCAG
AGTTTACAGGGGCTTTTTCCTGAGCTAGAGGTAGTGCTCCTAACTTCTGGGATGAAGGCCGCGGACAAAAAAGTAGCTCT
TTCCAAAATCGAATCTGGGGAGGCTCAGATGATCGTGGGGACTCACTCACTGATTCAGGATGCTGTGACTTATCACAGGC
TTGGGCTAGTAATTACTGATGAACAGCACCGTTTTGGGGTTAATCAACGTCGTATTTTCCGTGAGAAAGGTGACAATCCT
GATGTCCTTATGATGACAGCGACACCTATCCCTAGGACTTTGGCAATCACTGCCTTTGGGGAGATGGATGTGTCAATCAT
TGATCAAATGCCGGCTGGGCGCAAGCCCATTATTACCCGTTGGGTTAAACATGAGCAACTAGATACCGTACTGACTTGGA
TTAAGGGCGAGTTGGAAAAAGATGCTCAGGTCTATTTTATTTCTCCTTTGATTGAAGAGTCTGAGGCTCTTGATTTGAAA
AATGCTGTTGCCCTTCATCAGGAACTCACAGAGTTCTTTGGAGATTCAGCTACGGTGGCTCTGATGCATGGTCGCATGAA
AAATGATGAAAAAGACCAAATTATGCAGGACTTTAAGAACAAAAAATCTCAGATTTTAGTATCAACCACAGTTATCGAAG
TGGGAGTTAACGTACCTAATGCTACAGTTATGGTCATTATGGATGCGGATCGTTTTGGACTTAGCCAGCTTCACCAGCTT
CGAGGCCGTGTAGGTCGTGGCGACAAGCAGTCCTACTGTGTTTTGGTGGCTAATCCTAAAAATGATACTGGTAAAAAACG
CATGCAGGCCATGTGTGAGACCACGGATGGCTTTGTTCTAGCTGAGGAGGATCTTAAAATGCGTGGCTCAGGTGAAATCT
TTGGAACACGTCAGTCAGGAATTCCTGAATTTCAAGTGGCTGATATTGTGGAAGACTATAATATCCTAGAAGAAGCAAGG
CGCGTGGCCAGCCAAATTGTATCTGACCCTAACTGGCGCGAGAATCCTGATTGGCAGGTGCTAGGAGCTCATTTGAGAAG
CCAAGGCGAGTTTGATTGA

Domains

Predicted by InterProScan.

Helicase conserved C-terminal domain (Helicase_C)

(459-567)

ATP-dependent DNA helicase RecG, domain 3, C-terminal (RecG_dom3_C)

(594-667)

RecG wedge domain (RecG_wedge)

(11-158)

DEAD/DEAH box helicase (DEAD)

(255-412)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recG/mmsA Streptococcus pneumoniae R6

71.684

99.851

0.716
  recG/mmsA Streptococcus pneumoniae R36A

71.684

99.851

0.716
  recG Bacillus subtilis subsp. subtilis str. 168

49.183

100

0.493
  recG Neisseria meningitidis strain C311

39.403

99.702

0.393