Detailed information    

insolico Bioinformatically predicted

Overview

Name   uvrB   Type   Machinery gene
Locus tag   V6U65_RS07360 Genome accession   NZ_CP145863
Coordinates   1630414..1632405 (-) Length   663 a.a.
NCBI ID   WP_041826694.1    Uniprot ID   -
Organism   Streptococcus salivarius strain KSS6     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1625414..1637405
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  V6U65_RS07330 (V6U65_07325) rpsU 1625473..1625649 (-) 177 WP_002884573.1 30S ribosomal protein S21 -
  V6U65_RS07335 (V6U65_07330) - 1625844..1626638 (-) 795 WP_041826749.1 transporter substrate-binding domain-containing protein -
  V6U65_RS07340 (V6U65_07335) - 1626706..1627815 (-) 1110 WP_014634848.1 aminotransferase -
  V6U65_RS07345 (V6U65_07340) - 1628068..1628865 (-) 798 WP_014634849.1 transporter substrate-binding domain-containing protein -
  V6U65_RS07350 (V6U65_07345) - 1628877..1629689 (-) 813 WP_014634850.1 transporter substrate-binding domain-containing protein -
  V6U65_RS07355 (V6U65_07350) - 1629905..1630369 (-) 465 WP_002884748.1 8-oxo-dGTP diphosphatase -
  V6U65_RS07360 (V6U65_07355) uvrB 1630414..1632405 (-) 1992 WP_041826694.1 excinuclease ABC subunit UvrB Machinery gene
  V6U65_RS07365 (V6U65_07360) - 1632395..1633021 (-) 627 WP_014634852.1 hypothetical protein -
  V6U65_RS07370 (V6U65_07365) - 1633090..1634025 (-) 936 WP_410532302.1 CPBP family intramembrane glutamic endopeptidase -
  V6U65_RS07375 (V6U65_07370) - 1634224..1636422 (+) 2199 WP_002884334.1 ABC transporter substrate-binding protein/permease -
  V6U65_RS07380 (V6U65_07375) - 1636422..1637162 (+) 741 WP_002884797.1 amino acid ABC transporter ATP-binding protein -

Sequence

Protein


Download         Length: 663 a.a.        Molecular weight: 76048.11 Da        Isoelectric Point: 4.5858

>NTDB_id=853520 V6U65_RS07360 WP_041826694.1 1630414..1632405(-) (uvrB) [Streptococcus salivarius strain KSS6]
MIDRKEDNQFHLVSKYEPSGDQPQAIEALVDNIEGGEKAQILKGATGTGKTYTMSQVIQRVNKPTLVIAHNKTLAGQLYG
EFKEFFPDNAVEYFVSYYDFYQPEAYVPSSDTYIEKDSSVNDEIDKLRHSATSALLERNDVIVVASVSCIYGLGSPKEYA
DSAVSLRPGQEISRDKLLNDLVDIQFERNDIDFQRGKFRVRGDVVEIFPASRDEHAFRVEFFGDEIDRICEIESLTGRNL
GEVEHLVLFPATHFMTNEEHMEEAIKNIMEEMEAQVKQFEAEGKLIEAQRIRQRTEYDVEMLREMGYTNGVENYSRHMDG
RKEGEPPFTLLDFFPEDFLIMIDESHMTMGQIKGMYNGDQARKKMLVDYGFRLPSALDNRPLRREEFESHVHQIVYVSAT
PGDYEMEQTETVVEQIIRPTGLLDPEVEVRPTMGQMDDLLGEINARTEKGERVFVTTLTKKMAEDLTDYLKEMGVKVKYM
HSDIKTLERTEIIRDLRLGVFDVLIGINLLREGIDVPEVSLVAILDADKEGFLRNERGLIQTIGRAARNSEGHVIMYADK
ITESMQKAMDETARRREIQMAYNKEHGITPQTIKKEIRDLISITKVNEAEVAEDTVDYSAMNKKERQEAIKKLQKQMHEA
AELLDFELAAQIRDMVLELKSMD

Nucleotide


Download         Length: 1992 bp        

>NTDB_id=853520 V6U65_RS07360 WP_041826694.1 1630414..1632405(-) (uvrB) [Streptococcus salivarius strain KSS6]
ATGATAGATAGAAAAGAAGACAACCAATTCCATTTGGTTTCTAAATATGAACCTTCTGGGGATCAACCTCAGGCCATCGA
AGCCTTGGTGGATAATATTGAAGGTGGTGAGAAGGCTCAAATCCTAAAGGGTGCGACTGGGACAGGTAAGACTTATACCA
TGAGTCAGGTCATCCAGCGCGTCAATAAACCAACCTTGGTTATCGCCCACAATAAAACTTTGGCAGGTCAGCTTTATGGT
GAGTTCAAGGAGTTCTTCCCAGACAATGCTGTAGAATACTTCGTTTCCTACTATGATTTCTATCAGCCAGAGGCCTATGT
ACCGTCATCAGATACCTATATCGAAAAAGATAGTTCTGTAAACGATGAAATTGATAAGCTCCGTCACTCAGCAACGTCGG
CCCTCCTTGAGCGTAATGATGTTATCGTTGTGGCTTCCGTTTCTTGTATTTACGGTTTGGGTTCGCCCAAAGAATATGCC
GATTCAGCGGTTAGTCTTCGTCCAGGCCAAGAAATTTCTCGAGATAAGTTGCTCAATGACCTGGTTGATATCCAGTTTGA
GCGAAATGACATTGATTTCCAACGTGGGAAATTCCGTGTACGCGGTGATGTAGTCGAGATTTTCCCTGCCAGCCGCGATG
AACACGCCTTTCGTGTGGAATTTTTCGGTGATGAGATTGACCGTATCTGTGAGATTGAAAGTTTGACAGGACGCAATCTC
GGCGAGGTTGAGCACCTTGTTCTTTTCCCGGCGACTCACTTTATGACCAATGAAGAGCATATGGAAGAAGCCATCAAGAA
TATTATGGAAGAGATGGAAGCCCAGGTTAAGCAATTTGAAGCTGAGGGTAAGCTCATCGAGGCTCAACGTATCCGCCAGA
GGACTGAATACGATGTTGAAATGCTTCGTGAAATGGGCTACACCAATGGTGTTGAAAACTACTCACGACACATGGATGGA
CGTAAAGAAGGCGAGCCACCGTTCACCTTGCTTGATTTCTTCCCAGAAGATTTCCTTATCATGATTGATGAAAGTCACAT
GACCATGGGTCAGATTAAGGGAATGTATAACGGGGACCAGGCCCGTAAGAAGATGTTGGTTGATTACGGTTTCCGTTTGC
CATCAGCGCTTGATAACCGTCCACTTCGACGTGAAGAATTTGAGAGTCATGTTCATCAGATTGTCTATGTGTCTGCCACT
CCAGGTGACTATGAGATGGAGCAAACTGAGACTGTCGTTGAGCAAATTATCCGTCCGACAGGGCTCCTTGATCCAGAAGT
CGAAGTGCGTCCAACCATGGGACAAATGGATGACCTCCTTGGTGAAATCAATGCCCGAACTGAAAAAGGCGAGCGTGTCT
TCGTAACCACTTTGACTAAGAAGATGGCTGAAGACTTGACTGACTATCTTAAGGAAATGGGTGTCAAGGTTAAATACATG
CACTCTGACATTAAGACTTTGGAACGTACTGAGATTATCCGTGACCTACGTTTGGGTGTCTTTGATGTTCTTATCGGGAT
TAACCTTCTCCGTGAAGGGATTGACGTTCCTGAAGTTAGTCTGGTTGCTATTTTGGATGCTGATAAGGAAGGCTTCCTTC
GTAATGAACGTGGGCTTATCCAAACGATTGGACGTGCTGCCCGAAATAGTGAAGGGCACGTTATCATGTATGCGGATAAG
ATTACGGAGTCTATGCAGAAGGCCATGGATGAAACAGCTCGCCGTCGTGAAATCCAAATGGCTTATAATAAGGAACACGG
TATCACTCCGCAAACGATTAAGAAAGAAATTCGGGACCTTATTTCGATTACCAAGGTCAATGAAGCAGAAGTGGCAGAGG
ATACTGTGGACTACAGTGCTATGAACAAGAAAGAACGCCAAGAAGCCATCAAGAAACTTCAAAAACAAATGCACGAAGCG
GCAGAACTGCTTGACTTCGAGTTGGCGGCTCAAATCCGTGATATGGTTCTTGAGCTGAAGAGTATGGATTAA

Domains

Predicted by InterProScan.

UvrB/uvrC motif (UVR)

(628-660)

Helicase conserved C-terminal domain (Helicase_C)

(443-549)

Type III restriction enzyme, res subunit (ResIII)

(17-143)

UvrB interaction domain (UvrB_inter)

(164-254)

Ultra-violet resistance protein B (UvrB)

(556-598)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  uvrB Streptococcus pneumoniae R6

85.973

100

0.86
  uvrB Streptococcus pneumoniae D39

85.973

100

0.86
  uvrB Streptococcus pneumoniae TIGR4

85.822

100

0.858