Detailed information NTG0085341

Bioinformatically predicted

Overview

• Name: pilD
• Type: Machinery gene
• Locus tag: J3989_RS03260
• Genome accession: NZ_AP024489
• Coordinates: 655359..656219 (-)
• Length: 286 a.a.
• NCBI ID: WP_002220276.1
• Uniprot ID: -
• Organism: Neisseria meningitidis strain NIID777
• Function: assembly of type IV pilus (predicted from homology) DNA binding and uptake

Genomic Context

Location: 650359..661219

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
J3989_RS03220 (NMNIID777_05940)	rplU	650363..650671 (-)	309	WP_002216394.1	50S ribosomal protein L21	-
J3989_RS03230 (NMNIID777_05950)	ispB	650895..651869 (+)	975	WP_061694686.1	octaprenyl diphosphate synthase	-
J3989_RS03235 (NMNIID777_05960)	-	651874..652320 (+)	447	WP_002220271.1	DUF441 domain-containing protein	-
J3989_RS03245 (NMNIID777_05970)	pilF	652762..654438 (+)	1677	WP_002221967.1	type IV-A pilus assembly ATPase PilB	Machinery gene
J3989_RS03250	-	654523..654732 (-)	210	WP_002224872.1	DNA gyrase inhibitor YacG	-
J3989_RS03255 (NMNIID777_05980)	coaE	654725..655357 (-)	633	WP_002254836.1	dephospho-CoA kinase	-
J3989_RS03260 (NMNIID777_05990)	pilD	655359..656219 (-)	861	WP_002220276.1	A24 family peptidase	Machinery gene
J3989_RS03265 (NMNIID777_06000)	pilG	656293..657525 (-)	1233	WP_002216405.1	type 4 pilus assembly protein PilG	Machinery gene
J3989_RS03270 (NMNIID777_06010)	pgi	658034..659677 (+)	1644	WP_101116103.1	glucose-6-phosphate isomerase	-
J3989_RS03275	-	659647..659877 (+)	231	WP_002212338.1	hypothetical protein	-
J3989_RS03280 (NMNIID777_06020)	dapD	659887..660708 (+)	822	WP_002212339.1	2,3,4,5-tetrahydropyridine-2,6-dicarboxylate N-succinyltransferase	-

Sequence

Protein

• Length: 286 a.a.
• Molecular weight: 31359.40 Da
• Isoelectric Point: 8.2213

>NTDB_id=85341 J3989_RS03260 WP_002220276.1 655359..656219(-) (pilD) [Neisseria meningitidis strain NIID777]
MSDLSVLSPFAVPLAAVFGLLVGSFLNVVIYRVPVMMERGWTVFAKEYLNLPLTEEESRTFNLMKPDSCCPKCRVPIRAW
QNIPIVSYLLLRGKCASCQTKISIRYPLIELLTGVLFGLVAWQYGWSWITLGGLILTAFLISLTFIDADTQYLPDSMTLP
LIWLGLIFNLDGGFVPLQSAVLGAVAGYGSIWLLCAVYKLIKGEIGMGNGDFKLIAALGAWLGISALPVLIFVSSLIGLV
AAIVMRVAKGQHFAFGPALTVSGWIIFTANDSVWRAVNWWLTHPVL

Nucleotide

• Length: 861 bp

>NTDB_id=85341 J3989_RS03260 WP_002220276.1 655359..656219(-) (pilD) [Neisseria meningitidis strain NIID777]
ATGTCTGATTTGTCTGTATTGTCGCCGTTTGCCGTGCCTTTGGCAGCGGTGTTCGGGCTGCTGGTCGGAAGTTTCTTAAA
TGTCGTCATTTACCGCGTGCCGGTCATGATGGAGCGCGGCTGGACGGTATTTGCCAAAGAATATTTAAACCTGCCGCTGA
CCGAAGAGGAAAGCCGTACCTTCAACCTGATGAAACCGGATTCCTGCTGTCCCAAATGCCGCGTGCCGATACGCGCGTGG
CAGAACATCCCGATTGTCAGCTACCTGCTCCTGCGCGGCAAATGCGCCTCCTGCCAAACCAAAATCAGCATACGCTATCC
CTTAATCGAACTGCTGACCGGCGTATTGTTCGGGCTGGTTGCCTGGCAATACGGCTGGTCTTGGATTACATTGGGCGGTT
TGATACTGACCGCGTTTCTGATTTCCCTGACCTTTATCGATGCGGACACCCAATACCTGCCCGACTCGATGACATTACCC
TTGATTTGGCTGGGGCTGATATTTAATTTGGACGGCGGCTTCGTGCCTTTGCAGTCTGCCGTTTTAGGTGCGGTTGCCGG
CTATGGTTCGATATGGCTTTTATGCGCGGTATATAAACTGATTAAAGGCGAAATCGGTATGGGCAACGGAGATTTCAAAC
TGATTGCCGCATTGGGCGCGTGGCTCGGCATATCCGCATTGCCCGTGCTGATTTTTGTTTCCTCGCTGATCGGTTTGGTC
GCGGCAATCGTTATGCGCGTCGCCAAGGGGCAGCATTTTGCCTTCGGCCCCGCACTGACAGTTTCGGGCTGGATAATTTT
TACGGCAAACGATTCCGTATGGCGGGCGGTCAACTGGTGGCTGACCCATCCGGTGCTGTAA

Domains

Predicted by InterproScan.

• Bacterial Peptidase A24 N-terminal domain (A24_N_bact) (17-124)

• Type IV leader peptidase family (Peptidase_A24) (134-242)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
pilD	Neisseria gonorrhoeae MS11	96.14	99.65	0.958
pilD	Vibrio cholerae strain A1552	44.444	100	0.448
pilD	Vibrio campbellii strain DS40M4	44.928	96.503	0.434
pilD	Acinetobacter baumannii D1279779	46.97	92.308	0.434
pilD	Acinetobacter nosocomialis M2	46.97	92.308	0.434