Detailed information    

insolico Bioinformatically predicted

Overview

Name   uvrB   Type   Machinery gene
Locus tag   V6U64_RS02730 Genome accession   NZ_CP145862
Coordinates   527338..529329 (+) Length   663 a.a.
NCBI ID   WP_041826694.1    Uniprot ID   -
Organism   Streptococcus salivarius strain KSS4     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 522338..534329
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  V6U64_RS02710 (V6U64_02710) - 522585..523325 (-) 741 WP_129852008.1 amino acid ABC transporter ATP-binding protein -
  V6U64_RS02715 (V6U64_02715) - 523325..525523 (-) 2199 WP_164373430.1 ABC transporter substrate-binding protein/permease -
  V6U64_RS02720 (V6U64_02720) - 525722..526657 (+) 936 WP_347100441.1 type II CAAX endopeptidase family protein -
  V6U64_RS02725 (V6U64_02725) - 526728..527348 (+) 621 WP_410536919.1 hypothetical protein -
  V6U64_RS02730 (V6U64_02730) uvrB 527338..529329 (+) 1992 WP_041826694.1 excinuclease ABC subunit UvrB Machinery gene
  V6U64_RS02735 (V6U64_02735) - 529374..529838 (+) 465 WP_410536921.1 8-oxo-dGTP diphosphatase -
  V6U64_RS02740 (V6U64_02740) - 530054..530866 (+) 813 WP_022496612.1 transporter substrate-binding domain-containing protein -
  V6U64_RS02745 (V6U64_02745) - 530878..531675 (+) 798 WP_070576800.1 transporter substrate-binding domain-containing protein -
  V6U64_RS02750 (V6U64_02750) - 531921..533030 (+) 1110 WP_410536923.1 aminotransferase -
  V6U64_RS02755 (V6U64_02755) - 533098..533892 (+) 795 WP_037601831.1 transporter substrate-binding domain-containing protein -
  V6U64_RS02760 (V6U64_02760) rpsU 534085..534261 (+) 177 WP_002884573.1 30S ribosomal protein S21 -

Sequence

Protein


Download         Length: 663 a.a.        Molecular weight: 76048.11 Da        Isoelectric Point: 4.5858

>NTDB_id=853370 V6U64_RS02730 WP_041826694.1 527338..529329(+) (uvrB) [Streptococcus salivarius strain KSS4]
MIDRKEDNQFHLVSKYEPSGDQPQAIEALVDNIEGGEKAQILKGATGTGKTYTMSQVIQRVNKPTLVIAHNKTLAGQLYG
EFKEFFPDNAVEYFVSYYDFYQPEAYVPSSDTYIEKDSSVNDEIDKLRHSATSALLERNDVIVVASVSCIYGLGSPKEYA
DSAVSLRPGQEISRDKLLNDLVDIQFERNDIDFQRGKFRVRGDVVEIFPASRDEHAFRVEFFGDEIDRICEIESLTGRNL
GEVEHLVLFPATHFMTNEEHMEEAIKNIMEEMEAQVKQFEAEGKLIEAQRIRQRTEYDVEMLREMGYTNGVENYSRHMDG
RKEGEPPFTLLDFFPEDFLIMIDESHMTMGQIKGMYNGDQARKKMLVDYGFRLPSALDNRPLRREEFESHVHQIVYVSAT
PGDYEMEQTETVVEQIIRPTGLLDPEVEVRPTMGQMDDLLGEINARTEKGERVFVTTLTKKMAEDLTDYLKEMGVKVKYM
HSDIKTLERTEIIRDLRLGVFDVLIGINLLREGIDVPEVSLVAILDADKEGFLRNERGLIQTIGRAARNSEGHVIMYADK
ITESMQKAMDETARRREIQMAYNKEHGITPQTIKKEIRDLISITKVNEAEVAEDTVDYSAMNKKERQEAIKKLQKQMHEA
AELLDFELAAQIRDMVLELKSMD

Nucleotide


Download         Length: 1992 bp        

>NTDB_id=853370 V6U64_RS02730 WP_041826694.1 527338..529329(+) (uvrB) [Streptococcus salivarius strain KSS4]
ATGATAGATAGAAAAGAAGACAACCAATTTCATTTGGTTTCTAAATATGAACCTTCTGGGGACCAACCTCAGGCCATTGA
AGCCTTAGTTGATAATATCGAAGGTGGAGAAAAGGCTCAAATCCTAAAGGGAGCGACAGGGACAGGTAAGACCTATACCA
TGAGTCAAGTCATCCAGCGCGTGAATAAACCAACCTTGGTTATCGCCCACAATAAAACCTTAGCAGGTCAGCTTTACGGA
GAATTCAAGGAGTTTTTCCCAGACAATGCTGTAGAATACTTCGTTTCCTACTACGATTTCTATCAGCCAGAGGCCTATGT
ACCATCATCAGATACCTATATCGAAAAAGATAGCTCTGTAAACGATGAAATTGATAAGCTACGACACTCAGCAACGTCGG
CCCTCCTTGAGCGTAATGATGTTATCGTTGTGGCTTCTGTTTCTTGTATTTACGGTTTGGGTTCGCCCAAAGAATATGCT
GATTCAGCAGTCAGCCTTCGACCAGGCCAAGAGATTTCTCGAGACAAGCTGCTAAATGACCTAGTTGATATCCAGTTTGA
GCGAAACGATATTGATTTCCAACGTGGGAAATTCCGTGTGCGTGGCGATGTGGTCGAAATTTTTCCTGCCAGCCGTGATG
AGCACGCCTTTCGTGTCGAATTTTTCGGTGATGAGATTGACCGCATTTGTGAGATTGAGAGTCTGACCGGACGTAATCTC
GGTGAAGTTGAGCACCTTGTTCTTTTCCCGGCTACTCACTTTATGACCAATGAAGAGCATATGGAAGAAGCCATCAAGAA
TATTATGGAAGAGATGGAGGCTCAGGTTAAGCAATTTGAAGCCGAGGGGAAACTCATCGAGGCTCAACGTATCCGTCAAA
GGACAGAATACGATGTCGAAATGCTCCGTGAGATGGGCTACACCAACGGTGTCGAAAACTACTCGCGCCACATGGATGGT
CGAAAAGAAGGCGAGCCACCGTTTACTTTACTTGATTTCTTCCCAGAAGATTTCCTCATCATGATTGACGAAAGTCACAT
GACCATGGGACAGATTAAGGGAATGTATAACGGAGACCAAGCTCGTAAGAAGATGTTGGTTGATTACGGCTTCCGTTTAC
CGTCAGCTCTTGATAACCGTCCCCTTCGTCGTGAAGAATTCGAAAGTCATGTGCATCAGATTGTTTATGTATCAGCGACA
CCAGGTGACTATGAGATGGAGCAGACTGAGACCGTCGTTGAACAAATTATCCGTCCGACAGGGCTTCTTGATCCAGAAGT
CGAAGTGCGTCCAACTATGGGTCAAATGGACGATCTTCTCGGTGAGATTAATGCCCGTACTGAAAAAGGTGAGCGTGTCT
TTGTAACAACCTTGACTAAGAAGATGGCTGAAGACTTGACGGACTACCTCAAGGAAATGGGTGTCAAGGTCAAATATATG
CATTCTGATATTAAGACTTTGGAGCGTACTGAGATTATCCGTGACTTGCGTTTGGGTGTCTTTGATGTTCTTATTGGGAT
TAACCTTCTCCGTGAGGGGATTGACGTTCCTGAGGTTAGTCTGGTTGCTATTTTGGATGCTGATAAGGAAGGTTTTCTTC
GTAATGAACGTGGGCTTATCCAAACGATTGGACGTGCTGCCCGAAATAGTGAAGGGCACGTTATCATGTATGCGGATAAG
ATTACGGAGTCTATGCAGAAGGCCATGGATGAAACAGCTCGCCGTCGTGAAATCCAAATGGCTTATAATAAGGAACACGG
TATCACTCCGCAAACGATTAAGAAAGAAATTCGGGACCTTATTTCGATTACCAAGGTCAATGAAGCAGAAGTGGCAGAGG
ATACTGTGGACTACAGTGCTATGAACAAGAAAGAACGCCAAGAAGCCATCAAGAAACTTCAAAAACAAATGCACGAAGCG
GCAGAACTGCTTGACTTCGAGTTGGCGGCTCAAATCCGTGATATGGTTCTTGAGCTGAAGAGTATGGATTAA

Domains

Predicted by InterProScan.

UvrB/uvrC motif (UVR)

(628-660)

Helicase conserved C-terminal domain (Helicase_C)

(443-549)

Type III restriction enzyme, res subunit (ResIII)

(17-143)

UvrB interaction domain (UvrB_inter)

(164-254)

Ultra-violet resistance protein B (UvrB)

(556-598)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  uvrB Streptococcus pneumoniae R6

85.973

100

0.86
  uvrB Streptococcus pneumoniae D39

85.973

100

0.86
  uvrB Streptococcus pneumoniae TIGR4

85.822

100

0.858