Detailed information    

insolico Bioinformatically predicted

Overview

Name   recG/mmsA   Type   Machinery gene
Locus tag   V6U64_RS01550 Genome accession   NZ_CP145862
Coordinates   284555..286573 (+) Length   672 a.a.
NCBI ID   WP_073689912.1    Uniprot ID   -
Organism   Streptococcus salivarius strain KSS4     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 279555..291573
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  V6U64_RS01530 (V6U64_01530) - 280788..281819 (+) 1032 WP_002884553.1 3-deoxy-7-phosphoheptulonate synthase -
  V6U64_RS01535 (V6U64_01535) - 281904..282935 (+) 1032 WP_410536771.1 3-deoxy-7-phosphoheptulonate synthase -
  V6U64_RS01540 (V6U64_01540) acpS 282938..283291 (+) 354 WP_002891813.1 holo-ACP synthase -
  V6U64_RS01545 (V6U64_01545) alr 283319..284422 (+) 1104 WP_073689906.1 alanine racemase -
  V6U64_RS01550 (V6U64_01550) recG/mmsA 284555..286573 (+) 2019 WP_073689912.1 ATP-dependent DNA helicase RecG Machinery gene
  V6U64_RS01555 (V6U64_01555) - 286585..287091 (+) 507 WP_073689907.1 hypothetical protein -
  V6U64_RS01560 (V6U64_01560) - 287710..288147 (+) 438 WP_073689908.1 hypothetical protein -
  V6U64_RS01565 (V6U64_01565) - 288341..288949 (+) 609 WP_073689909.1 DUF2975 domain-containing protein -
  V6U64_RS01570 (V6U64_01570) - 288959..289171 (+) 213 WP_002884695.1 helix-turn-helix domain-containing protein -
  V6U64_RS01575 (V6U64_01575) - 289221..289364 (-) 144 WP_171966960.1 hypothetical protein -
  V6U64_RS01580 (V6U64_01580) - 289368..290333 (-) 966 WP_073688481.1 asparaginase -

Sequence

Protein


Download         Length: 672 a.a.        Molecular weight: 75262.46 Da        Isoelectric Point: 5.4807

>NTDB_id=853357 V6U64_RS01550 WP_073689912.1 284555..286573(+) (recG/mmsA) [Streptococcus salivarius strain KSS4]
MIQLDSPIADLKGFGPKSAEKFTKLDLYTVGDLLLYFPFRYEDFKSKSIFELMDGEKAVITGTVVTPANVQYYGFKRNRL
SFKIKQGEAVIAISFFNQPYLVDKIEMGAEVAIFGKWDQKKSAVTGMKVLAQVEDDMQPVYHVAQGVSQAQLIKAIKAAF
DSGALNLLEENLPQVLLDKYRLMGRQEAVRAMHFPKDLAEYKQALRRTKFEELFYFQMNLQVLKAENKSETNGLAIAYDE
AKIKAKIAELPFPLTEAQQRSLSEILADMKSGAHMNRLLQGDVGSGKTVIASLAMYGAYTAGFQSALMVPTEILAEQHYQ
SLQGLFPELEVVLLTSGMKAADKKVALSKIESGEAQMIVGTHSLIQDAVTYHSLGLVITDEQHRFGVNQRRIFREKGDNP
DVLMMTATPIPRTLAITAFGEMDVSIIDQMPAGRKPIITRWVKHEQLDTVLTWIKGELEKDAQVYFISPLIEESEALDLK
NAVALHQELTEFFGDSATVALMHGRMKNDEKDQIMQDFKDRKSQILVSTTVIEVGVNVPNATVMVIMDADRFGLSQLHQL
RGRVGRGDKQSYCVLVANPKNDTGKKRMQAMCETTDGFVLAEEDLKMRGSGEIFGTRQSGIPEFQVADIVEDYNILEEAR
RVASQIVSDPNWRENPEWQVLGAHLRSQGEFD

Nucleotide


Download         Length: 2019 bp        

>NTDB_id=853357 V6U64_RS01550 WP_073689912.1 284555..286573(+) (recG/mmsA) [Streptococcus salivarius strain KSS4]
ATGATTCAACTAGATTCACCAATTGCGGATTTGAAAGGCTTTGGGCCTAAGTCCGCTGAAAAATTTACCAAATTAGATTT
ATACACGGTTGGGGACCTCTTGCTTTATTTTCCTTTCCGATATGAGGATTTTAAGAGTAAGTCTATCTTTGAACTGATGG
ATGGCGAAAAGGCTGTTATTACGGGAACAGTGGTGACGCCTGCCAATGTGCAGTATTATGGCTTTAAACGGAATCGTCTG
AGTTTTAAAATCAAGCAAGGAGAGGCTGTGATTGCCATTAGTTTCTTCAACCAACCTTATCTTGTGGACAAGATTGAGAT
GGGGGCAGAAGTGGCTATTTTTGGCAAATGGGACCAGAAGAAGTCTGCTGTGACTGGTATGAAAGTCCTGGCTCAAGTTG
AGGACGATATGCAGCCAGTCTACCATGTGGCCCAGGGTGTTAGTCAGGCCCAACTGATAAAGGCCATAAAGGCAGCTTTT
GATAGTGGGGCCCTTAATTTGTTGGAGGAAAATCTCCCTCAGGTGCTGCTGGACAAGTACCGTCTCATGGGACGTCAAGA
GGCTGTGCGTGCCATGCATTTTCCGAAAGATTTGGCTGAATATAAGCAGGCCCTACGTAGGACCAAGTTTGAGGAGCTCT
TTTATTTCCAGATGAATTTACAGGTGCTGAAGGCTGAAAATAAGTCCGAAACCAATGGTCTAGCAATTGCTTACGATGAA
GCCAAAATCAAAGCCAAAATTGCAGAATTACCATTCCCCTTAACAGAGGCCCAACAGCGTAGTTTATCGGAAATCCTAGC
TGATATGAAATCTGGGGCTCATATGAACCGTCTCTTGCAAGGAGATGTGGGCTCAGGGAAAACAGTTATCGCTAGCTTGG
CTATGTATGGGGCCTATACGGCAGGATTTCAGTCTGCCCTCATGGTACCGACGGAAATCTTAGCAGAGCAGCATTATCAG
AGTTTACAGGGGCTTTTTCCTGAGTTAGAGGTAGTGCTCCTAACTTCTGGAATGAAGGCGGCGGATAAGAAAGTAGCCCT
TTCCAAAATCGAGTCTGGGGAGGCTCAGATGATTGTGGGAACCCACTCGTTGATTCAAGATGCAGTGACTTATCATAGTC
TTGGGCTAGTCATTACTGATGAACAGCACCGATTTGGAGTTAATCAACGTCGTATTTTCCGTGAGAAGGGTGACAATCCT
GATGTCCTCATGATGACAGCGACCCCTATCCCTAGGACCTTGGCAATCACTGCCTTTGGGGAGATGGATGTATCTATCAT
TGACCAGATGCCAGCTGGACGTAAGCCCATTATTACCCGTTGGGTTAAGCATGAGCAGTTAGATACTGTATTGACTTGGA
TTAAGGGGGAGTTGGAAAAAGATGCTCAGGTCTATTTTATTTCTCCTCTGATTGAAGAGTCTGAGGCTCTTGATTTGAAA
AATGCGGTGGCCCTTCATCAGGAACTCACAGAGTTCTTTGGGGATTCAGCTACAGTAGCTCTGATGCACGGTCGTATGAA
AAATGATGAAAAAGACCAAATTATGCAAGATTTCAAGGACAGAAAATCTCAGATTTTAGTATCAACTACAGTTATCGAAG
TAGGTGTTAACGTGCCAAATGCTACAGTTATGGTCATTATGGATGCGGATCGTTTTGGACTTAGCCAGCTTCACCAGCTT
CGAGGGCGTGTTGGTCGTGGCGATAAGCAGTCCTACTGTGTTTTGGTGGCTAATCCTAAAAATGATACTGGTAAAAAACG
CATGCAGGCCATGTGTGAGACCACGGATGGCTTTGTTCTAGCTGAGGAGGATCTTAAAATGCGTGGCTCAGGTGAAATCT
TTGGGACACGTCAGTCAGGTATTCCTGAATTTCAGGTGGCCGATATTGTGGAAGACTACAATATCTTAGAGGAAGCCAGA
CGGGTGGCTAGCCAAATTGTATCTGACCCTAACTGGCGAGAGAATCCTGAATGGCAGGTGCTAGGGGCACATTTGAGAAG
CCAAGGCGAGTTTGATTGA

Domains

Predicted by InterProScan.

ATP-dependent DNA helicase RecG, domain 3, C-terminal (RecG_dom3_C)

(594-667)

DEAD/DEAH box helicase (DEAD)

(255-412)

Helicase conserved C-terminal domain (Helicase_C)

(459-567)

RecG wedge domain (RecG_wedge)

(11-158)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recG/mmsA Streptococcus pneumoniae R6

72.131

99.851

0.72
  recG/mmsA Streptococcus pneumoniae R36A

72.131

99.851

0.72
  recG Bacillus subtilis subsp. subtilis str. 168

49.48

100

0.496
  recG Neisseria meningitidis strain C311

39.403

99.702

0.393