Detailed information    

insolico Bioinformatically predicted

Overview

Name   recG/mmsA   Type   Machinery gene
Locus tag   V6U63_RS08535 Genome accession   NZ_CP145861
Coordinates   1866426..1868444 (-) Length   672 a.a.
NCBI ID   WP_410531178.1    Uniprot ID   -
Organism   Streptococcus salivarius strain KSS3     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1861426..1873444
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  V6U63_RS08505 (V6U63_08490) - 1862656..1863621 (+) 966 WP_049545369.1 asparaginase -
  V6U63_RS08510 (V6U63_08495) - 1863625..1863768 (+) 144 WP_171966960.1 hypothetical protein -
  V6U63_RS08515 (V6U63_08500) - 1863819..1864031 (-) 213 WP_002884695.1 helix-turn-helix domain-containing protein -
  V6U63_RS08520 (V6U63_08505) - 1864041..1864649 (-) 609 WP_049545360.1 DUF2975 domain-containing protein -
  V6U63_RS08525 (V6U63_08510) - 1864843..1865289 (-) 447 WP_049545359.1 hypothetical protein -
  V6U63_RS08530 (V6U63_08515) - 1865908..1866414 (-) 507 WP_183139954.1 hypothetical protein -
  V6U63_RS08535 (V6U63_08520) recG/mmsA 1866426..1868444 (-) 2019 WP_410531178.1 ATP-dependent DNA helicase RecG Machinery gene
  V6U63_RS08540 (V6U63_08525) alr 1868577..1869680 (-) 1104 WP_155211870.1 alanine racemase -
  V6U63_RS08545 (V6U63_08530) acpS 1869708..1870061 (-) 354 WP_022496303.1 holo-ACP synthase -
  V6U63_RS08550 (V6U63_08535) - 1870064..1871095 (-) 1032 WP_002884569.1 3-deoxy-7-phosphoheptulonate synthase -
  V6U63_RS08555 (V6U63_08540) - 1871180..1872211 (-) 1032 WP_104021357.1 3-deoxy-7-phosphoheptulonate synthase -

Sequence

Protein


Download         Length: 672 a.a.        Molecular weight: 75233.49 Da        Isoelectric Point: 5.9402

>NTDB_id=853308 V6U63_RS08535 WP_410531178.1 1866426..1868444(-) (recG/mmsA) [Streptococcus salivarius strain KSS3]
MIQLDSPIADLKGFGPKSAEKFTKLDLHTVGDLLLYFPFRYEDFKSKSIFELMDGEKAVITGTVVTPANVQYYGFKRNRL
SFKIKQGEAVIAISFFNQPYLVDKIEMGAEVAIFGKWDQKKSAVTGMKVLAQVEDDMQPVYHVAQGVSQAQLIKAIRAAF
DSGALNLLEESLPQVLMDKYRLMGRQEAVRAMHFPKDLAEYKQALRRTKFEELFYFQMNLQVLKAENKSETNGLVIAYDE
AKIKAKIAALPFPLTEAQQRSLSEILADMKSGAHMNRLLQGDVGSGKTVIASLAMYGAYTAGFQSALMVPTEILAEQHYQ
SLQGLFPELEVVLLTSGMKAADKKVALSKIESGEAQMIVGTHSLIQDAVTYHSLGLVITDEQHRFGVNQRRIFREKGDNP
DVLMMTATPIPRTLAITAFGEMDVSIIDQMPAGRKPIITRWVKHEQLDTVLTWIKGELEKDAQVYFISPLIEESEALDLK
NAVALHQELTEFFGDSATVALMHGRMKNDEKDQIMQDFKDRKSQILVSTTVIEVGVNVPNATVMVIMDADRFGLSQLHQL
RGRVGRGHKQSYCVLVANPKNDTGKKRMQAMCETTDGFVLAEEDLKMRGSGEIFGTRQSGIPEFQVADIVEDYNILEEAR
RVASQIVSDPNWRENPDWQVLGAHLRSQGEFD

Nucleotide


Download         Length: 2019 bp        

>NTDB_id=853308 V6U63_RS08535 WP_410531178.1 1866426..1868444(-) (recG/mmsA) [Streptococcus salivarius strain KSS3]
ATGATTCAACTAGATTCACCGATTGCGGATTTGAAAGGCTTTGGTCCTAAGTCCGCTGAAAAATTTACCAAATTAGATTT
GCACACGGTTGGGGACCTCTTGCTTTATTTTCCTTTCCGATATGAAGATTTTAAGAGTAAGTCTATCTTTGAACTGATGG
ATGGCGAAAAGGCTGTTATTACGGGAACGGTGGTGACACCTGCCAATGTGCAGTATTATGGCTTTAAACGGAATCGTCTG
AGTTTTAAAATCAAGCAAGGAGAGGCAGTGATTGCCATTAGTTTCTTCAACCAGCCTTATCTTGTGGACAAGATTGAGAT
GGGGGCAGAAGTGGCTATTTTTGGCAAATGGGACCAGAAGAAGTCTGCAGTGACTGGTATGAAAGTGTTGGCTCAAGTTG
AGGACGATATGCAGCCAGTTTACCATGTGGCCCAGGGCGTTAGTCAGGCCCAGCTGATAAAGGCTATAAGGGCAGCTTTT
GATAGTGGGGCCTTGAATTTGTTGGAGGAGAGTCTCCCACAGGTGCTTATGGACAAGTATCGTCTTATGGGACGCCAAGA
GGCTGTGCGTGCTATGCATTTTCCGAAAGATTTGGCTGAATATAAGCAGGCTTTACGTAGGACCAAGTTTGAGGAGCTCT
TTTATTTCCAGATGAATTTACAGGTGCTGAAGGCTGAAAATAAGTCCGAAACCAATGGTCTAGTAATTGCTTACGATGAA
GCCAAAATCAAAGCCAAAATTGCAGCATTACCGTTCCCCTTAACAGAGGCCCAACAGCGTAGTTTATCGGAAATCCTAGC
TGATATGAAATCTGGGGCTCATATGAACCGTCTCTTGCAAGGAGATGTGGGCTCAGGGAAAACAGTTATCGCTAGCTTGG
CTATGTATGGGGCCTATACGGCAGGATTTCAGTCTGCCCTCATGGTACCGACGGAAATCTTAGCAGAGCAGCATTATCAG
AGTTTACAGGGGCTTTTTCCTGAGCTAGAGGTAGTGCTCCTAACTTCTGGGATGAAGGCGGCGGACAAGAAGGTAGCTCT
TTCTAAAATCGAATCGGGGGAGGCTCAGATGATTGTGGGGACTCACTCACTGATTCAGGATGCTGTGACTTATCACAGTC
TTGGGCTAGTCATTACTGATGAACAGCACCGATTTGGAGTTAATCAACGTCGTATTTTCCGTGAGAAAGGTGACAATCCT
GATGTCCTTATGATGACAGCGACACCTATCCCTAGGACTTTGGCGATCACTGCCTTTGGGGAGATGGATGTATCTATCAT
TGACCAGATGCCAGCTGGACGTAAGCCCATCATCACCCGTTGGGTCAAACATGAGCAGTTAGATACCGTACTGACTTGGA
TTAAGGGTGAGTTGGAAAAAGACGCTCAGGTCTATTTTATCTCTCCTCTGATTGAAGAGTCTGAGGCTCTCGATTTGAAA
AATGCCGTTGCTCTTCACCAGGAACTCACTGAGTTCTTTGGGGATTCAGCTACAGTAGCTCTGATGCACGGTCGTATGAA
AAATGATGAAAAAGACCAAATTATGCAAGATTTCAAGGACAGAAAATCTCAGATTTTAGTATCAACTACAGTTATCGAAG
TGGGGGTTAACGTGCCAAACGCTACGGTTATGGTCATTATGGATGCCGACCGCTTTGGACTTAGCCAGCTTCACCAACTT
CGTGGACGTGTAGGTCGTGGCCATAAGCAGTCCTACTGTGTTTTAGTGGCCAATCCTAAAAATGATACTGGAAAAAAACG
CATGCAGGCCATGTGTGAGACTACGGATGGTTTTGTTCTAGCAGAAGAGGACCTAAAAATGCGTGGTTCAGGAGAAATCT
TTGGAACACGTCAGTCAGGAATTCCTGAATTTCAAGTGGCTGATATTGTGGAAGACTATAATATCCTAGAAGAAGCAAGG
CGCGTGGCCAGCCAAATTGTGTCTGACCCTAACTGGCGCGAGAATCCTGATTGGCAGGTGCTAGGAGCTCATTTGAGAAG
CCAAGGCGAGTTTGATTGA

Domains

Predicted by InterProScan.

RecG wedge domain (RecG_wedge)

(11-158)

DEAD/DEAH box helicase (DEAD)

(255-412)

Helicase conserved C-terminal domain (Helicase_C)

(459-567)

ATP-dependent DNA helicase RecG, domain 3, C-terminal (RecG_dom3_C)

(594-667)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recG/mmsA Streptococcus pneumoniae R6

71.535

99.851

0.714
  recG/mmsA Streptococcus pneumoniae R36A

71.535

99.851

0.714
  recG Bacillus subtilis subsp. subtilis str. 168

49.183

100

0.493
  recG Neisseria meningitidis strain C311

39.254

99.702

0.391