Detailed information    

insolico Bioinformatically predicted

Overview

Name   uvrB   Type   Machinery gene
Locus tag   V6U63_RS07310 Genome accession   NZ_CP145861
Coordinates   1624540..1626531 (-) Length   663 a.a.
NCBI ID   WP_049546231.1    Uniprot ID   -
Organism   Streptococcus salivarius strain KSS3     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1619540..1631531
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  V6U63_RS07280 (V6U63_07275) rpsU 1619607..1619783 (-) 177 WP_002884573.1 30S ribosomal protein S21 -
  V6U63_RS07285 (V6U63_07280) - 1619977..1620771 (-) 795 WP_049545253.1 transporter substrate-binding domain-containing protein -
  V6U63_RS07290 (V6U63_07285) - 1620833..1621942 (-) 1110 WP_049545252.1 aminotransferase -
  V6U63_RS07295 (V6U63_07290) - 1622195..1622992 (-) 798 WP_014634849.1 transporter substrate-binding domain-containing protein -
  V6U63_RS07300 (V6U63_07295) - 1623004..1623816 (-) 813 WP_073687904.1 transporter substrate-binding domain-containing protein -
  V6U63_RS07305 (V6U63_07300) - 1624031..1624495 (-) 465 WP_049546232.1 8-oxo-dGTP diphosphatase -
  V6U63_RS07310 (V6U63_07305) uvrB 1624540..1626531 (-) 1992 WP_049546231.1 excinuclease ABC subunit UvrB Machinery gene
  V6U63_RS07315 (V6U63_07310) - 1626521..1627140 (-) 620 Protein_1400 hypothetical protein -
  V6U63_RS07320 (V6U63_07315) - 1627211..1628146 (-) 936 WP_037602895.1 CPBP family intramembrane glutamic endopeptidase -
  V6U63_RS07325 (V6U63_07320) - 1628345..1630543 (+) 2199 WP_349955385.1 ABC transporter substrate-binding protein/permease -
  V6U63_RS07330 (V6U63_07325) - 1630543..1631283 (+) 741 WP_037601657.1 amino acid ABC transporter ATP-binding protein -

Sequence

Protein


Download         Length: 663 a.a.        Molecular weight: 76062.14 Da        Isoelectric Point: 4.5858

>NTDB_id=853295 V6U63_RS07310 WP_049546231.1 1624540..1626531(-) (uvrB) [Streptococcus salivarius strain KSS3]
MIDRKEDNQFHLVSKYEPSGDQPQAIEALVDNIEGGEKAQILKGATGTGKTYTMSQVIQRVNKPTLVIAHNKTLAGQLYG
EFKEFFPDNAVEYFVSYYDFYQPEAYVPSSDTYIEKDSSVNDEIDKLRHSATSALLERNDIIVVASVSCIYGLGSPKEYA
DSAVSLRPGQEISRDKLLNDLVDIQFERNDIDFQRGKFRVRGDVVEIFPASRDEHAFRVEFFGDEIDRICEIESLTGRNL
GEVEHLVLFPATHFMTNEEHMEEAIKNIMEEMEAQVKQFEAEGKLIEAQRIRQRTEYDVEMLREMGYTNGVENYSRHMDG
RKEGEPPFTLLDFFPEDFLIMIDESHMTMGQIKGMYNGDQARKKMLVDYGFRLPSALDNRPLRREEFESHVHQIVYVSAT
PGDYEMEQTETVVEQIIRPTGLLDPEVEVRPTMGQMDDLLGEINARTEKGERVFVTTLTKKMAEDLTDYLKEMGVKVKYM
HSDIKTLERTEIIRDLRLGVFDVLIGINLLREGIDVPEVSLVAILDADKEGFLRNERGLIQTIGRAARNSEGHVIMYADK
ITESMQKAMDETARRREIQMAYNKEHGITPQTIKKEIRDLISITKVNEAEVAEDTVDYSAMNKKERQEAIKKLQKQMHEA
AELLDFELAAQIRDMVLELKSMD

Nucleotide


Download         Length: 1992 bp        

>NTDB_id=853295 V6U63_RS07310 WP_049546231.1 1624540..1626531(-) (uvrB) [Streptococcus salivarius strain KSS3]
ATGATAGATAGAAAAGAAGATAACCAATTCCATTTGGTTTCTAAATATGAACCTTCTGGGGATCAACCTCAGGCCATCGA
AGCCTTGGTGGATAATATTGAAGGTGGTGAGAAGGCTCAAATTCTAAAGGGGGCGACAGGGACAGGTAAGACTTATACCA
TGAGTCAGGTCATCCAGCGCGTCAATAAACCAACCTTGGTTATCGCCCACAATAAAACTTTGGCAGGTCAGCTTTATGGA
GAGTTCAAGGAGTTTTTCCCAGACAATGCTGTAGAATACTTCGTTTCCTACTATGATTTCTATCAGCCAGAGGCCTATGT
ACCGTCATCGGATACCTATATCGAAAAAGATAGCTCTGTAAATGATGAAATTGATAAGCTACGACACTCAGCAACGTCTG
CCCTCCTTGAGCGTAATGATATTATCGTTGTGGCTTCCGTTTCTTGTATTTACGGTTTGGGTTCGCCCAAAGAATATGCC
GATTCAGCGGTTAGTCTTCGTCCAGGCCAAGAAATTTCTCGAGATAAGTTGCTCAATGACCTGGTTGATATCCAGTTTGA
GCGAAATGACATTGATTTCCAACGTGGGAAATTCCGTGTACGTGGTGATGTGGTCGAAATCTTTCCTGCCAGCCGTGATG
AGCACGCCTTTCGTGTCGAATTTTTCGGTGATGAGATTGACCGCATCTGTGAGATTGAAAGTTTGACAGGACGCAATCTC
GGTGAAGTTGAGCACCTTGTTCTTTTCCCAGCGACTCACTTTATGACCAACGAAGAGCATATGGAAGAAGCCATCAAGAA
TATTATGGAAGAGATGGAAGCTCAGGTTAAGCAATTTGAGGCTGAGGGTAAGCTCATCGAGGCTCAACGTATCCGCCAAA
GGACAGAATACGATGTTGAAATGCTTCGTGAGATGGGTTACACCAATGGTGTTGAAAACTACTCACGACACATGGATGGA
CGTAAAGAAGGCGAGCCCCCCTTCACCTTGCTTGATTTCTTCCCAGAAGATTTCCTTATCATGATTGATGAAAGTCACAT
GACCATGGGTCAGATTAAGGGAATGTATAACGGGGACCAGGCCCGTAAGAAGATGTTGGTTGATTACGGTTTCCGTTTGC
CATCAGCGCTTGATAACCGTCCACTTCGACGTGAAGAATTTGAGAGTCATGTTCATCAGATTGTCTATGTGTCTGCCACT
CCAGGTGACTATGAGATGGAGCAAACTGAGACTGTCGTTGAGCAAATTATCCGTCCGACAGGGCTCCTTGATCCAGAAGT
CGAAGTGCGTCCAACTATGGGACAAATGGATGACCTCCTTGGTGAAATCAATGCCCGAACTGAAAAAGGCGAGCGTGTCT
TTGTAACCACTTTGACTAAGAAGATGGCTGAAGACTTGACTGACTATCTCAAGGAAATGGGTGTCAAGGTCAAATACATG
CACTCTGACATTAAGACTTTGGAGCGTACTGAGATTATCCGTGACCTACGTTTGGGTGTCTTTGATGTTCTTATTGGGAT
TAACCTTCTTCGTGAAGGGATTGACGTTCCTGAGGTTAGTCTGGTTGCTATTTTGGATGCGGATAAGGAAGGCTTCCTTC
GTAACGAACGTGGACTTATCCAAACGATCGGACGTGCTGCCCGAAATAGCGAAGGTCACGTTATTATGTATGCAGATAAG
ATTACGGAGTCTATGCAAAAAGCCATGGATGAAACAGCTCGCCGTCGTGAAATCCAAATGGCTTATAATAAGGAACACGG
TATCACTCCACAAACGATTAAGAAAGAAATTCGGGACCTTATTTCGATTACCAAGGTCAATGAAGCAGAAGTGGCAGAGG
ATACGGTGGACTACAGTGCTATGAACAAGAAAGAACGCCAAGAAGCCATCAAGAAACTTCAAAAGCAAATGCACGAAGCG
GCAGAACTGCTTGACTTCGAGTTGGCGGCTCAAATCCGTGATATGGTTCTTGAGCTGAAGAGTATGGATTAA

Domains

Predicted by InterProScan.

UvrB/uvrC motif (UVR)

(628-660)

UvrB interaction domain (UvrB_inter)

(164-254)

Type III restriction enzyme, res subunit (ResIII)

(17-133)

Ultra-violet resistance protein B (UvrB)

(556-598)

Helicase conserved C-terminal domain (Helicase_C)

(443-549)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  uvrB Streptococcus pneumoniae R6

85.822

100

0.858
  uvrB Streptococcus pneumoniae D39

85.822

100

0.858
  uvrB Streptococcus pneumoniae TIGR4

85.671

100

0.857