Detailed information    

insolico Bioinformatically predicted

Overview

Name   comL   Type   Machinery gene
Locus tag   QUE29_RS14715 Genome accession   NZ_AP027258
Coordinates   2969239..2969976 (+) Length   245 a.a.
NCBI ID   WP_000197686.1    Uniprot ID   P0AC03
Organism   Escherichia coli strain JNE151685     
Function   DNA binding (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2964239..2974976
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QUE29_RS14700 (JNE151685_28060) clpC 2964693..2967266 (-) 2574 WP_001235102.1 ATP-dependent chaperone ClpB Regulator
  QUE29_RS14705 (JNE151685_28070) yfiH 2967396..2968127 (-) 732 WP_001543096.1 purine nucleoside phosphorylase YfiH -
  QUE29_RS14710 (JNE151685_28080) rluD 2968124..2969104 (-) 981 WP_000079112.1 23S rRNA pseudouridine(1911/1915/1917) synthase RluD -
  QUE29_RS14715 (JNE151685_28090) comL 2969239..2969976 (+) 738 WP_000197686.1 outer membrane protein assembly factor BamD Machinery gene
  QUE29_RS14720 (JNE151685_28100) raiA 2970247..2970588 (+) 342 WP_000178456.1 ribosome-associated translation inhibitor RaiA -
  QUE29_RS14725 pheL 2970692..2970739 (+) 48 WP_001700969.1 pheA operon leader peptide PheL -
  QUE29_RS14730 (JNE151685_28110) pheA 2970838..2971998 (+) 1161 WP_000200139.1 bifunctional chorismate mutase/prephenate dehydratase -
  QUE29_RS14735 (JNE151685_28120) tyrA 2972041..2973162 (-) 1122 WP_000225221.1 bifunctional chorismate mutase/prephenate dehydrogenase -
  QUE29_RS14740 (JNE151685_28130) aroF 2973173..2974243 (-) 1071 WP_044864299.1 3-deoxy-7-phosphoheptulonate synthase AroF -
  QUE29_RS14745 (JNE151685_28140) yfiL 2974453..2974818 (+) 366 WP_001368400.1 DUF2799 domain-containing protein -

Sequence

Protein


Download         Length: 245 a.a.        Molecular weight: 27829.40 Da        Isoelectric Point: 6.4874

>NTDB_id=85328 QUE29_RS14715 WP_000197686.1 2969239..2969976(+) (comL) [Escherichia coli strain JNE151685]
MTRMKYLVAAATLSLFLAGCSGSKEEVPDNPPNEIYATAQQKLQDGNWRQAITQLEALDNRYPFGPYSQQVQLDLIYAYY
KNADLPLAQAAIDRFIRLNPTHPNIDYVMYMRGLTNMALDDSALQGFFGVDRSDRDPQHARAAFSDFSKLVRGYPNSQYT
TDATKRLVFLKDRLAKYEYSVAEYYTERGAWVAVVNRVEGMLRDYPDTQATRDALPLMENAYRQMQMNAQAEKVAKIIAA
NSSNT

Nucleotide


Download         Length: 738 bp        

>NTDB_id=85328 QUE29_RS14715 WP_000197686.1 2969239..2969976(+) (comL) [Escherichia coli strain JNE151685]
ATGACGCGCATGAAATATCTGGTGGCAGCCGCCACACTAAGCCTGTTTTTGGCGGGTTGCTCGGGGTCAAAGGAAGAAGT
ACCTGATAATCCGCCAAATGAAATTTACGCGACTGCACAACAAAAGCTGCAGGACGGTAACTGGAGACAGGCAATAACGC
AACTGGAAGCGTTAGATAATCGCTATCCGTTTGGTCCGTATTCGCAGCAGGTGCAGCTGGATCTCATCTACGCCTACTAT
AAAAACGCCGATTTGCCGTTAGCGCAGGCTGCCATCGATCGTTTTATTCGCCTTAACCCGACCCATCCGAATATCGATTA
TGTCATGTACATGCGTGGCCTGACCAATATGGCGCTGGATGACAGTGCGCTGCAAGGGTTCTTTGGCGTCGATCGTAGCG
ATCGCGATCCTCAACATGCACGAGCTGCGTTTAGTGACTTTTCCAAACTGGTGCGCGGCTATCCGAACAGTCAGTACACC
ACCGATGCCACCAAACGTCTGGTATTCCTGAAAGATCGTCTGGCGAAATATGAATACTCCGTGGCCGAGTACTATACAGA
ACGTGGCGCATGGGTTGCCGTCGTTAACCGCGTAGAAGGCATGTTGCGCGACTACCCGGATACCCAGGCTACGCGTGATG
CGCTGCCGCTGATGGAAAATGCATACCGTCAGATGCAGATGAATGCGCAAGCTGAAAAAGTAGCGAAAATCATCGCCGCA
AACAGCAGCAATACATAA

Domains

Predicted by InterProScan.

Outer membrane lipoprotein (YfiO)

(28-236)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB P0AC03

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comL Neisseria meningitidis MC58

38.525

99.592

0.384
  comL Neisseria gonorrhoeae MS11

37.705

99.592

0.376

Multiple sequence alignment