Detailed information    

insolico Bioinformatically predicted

Overview

Name   ruvA   Type   Machinery gene
Locus tag   V6U63_RS00330 Genome accession   NZ_CP145861
Coordinates   55301..55891 (+) Length   196 a.a.
NCBI ID   WP_002886323.1    Uniprot ID   -
Organism   Streptococcus salivarius strain KSS3     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 50301..60891
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  V6U63_RS00305 (V6U63_00305) - 51425..51880 (-) 456 WP_045768436.1 DUF3021 domain-containing protein -
  V6U63_RS00310 (V6U63_00310) - 51877..52314 (-) 438 WP_073686198.1 LytTR family DNA-binding domain-containing protein -
  V6U63_RS00315 (V6U63_00315) - 52493..52798 (+) 306 WP_002886319.1 hypothetical protein -
  V6U63_RS00320 (V6U63_00320) hexB 52848..54791 (+) 1944 WP_022495805.1 DNA mismatch repair endonuclease MutL Machinery gene
  V6U63_RS00325 (V6U63_00325) - 54922..55143 (+) 222 WP_022495804.1 hypothetical protein -
  V6U63_RS00330 (V6U63_00330) ruvA 55301..55891 (+) 591 WP_002886323.1 Holliday junction branch migration protein RuvA Machinery gene
  V6U63_RS00335 (V6U63_00335) - 55900..56454 (+) 555 WP_002886325.1 DNA-3-methyladenine glycosylase I -
  V6U63_RS00340 (V6U63_00340) cinA 56551..57819 (+) 1269 WP_014633777.1 competence/damage-inducible protein A Machinery gene
  V6U63_RS00345 (V6U63_00345) recA 57855..58994 (+) 1140 WP_002886327.1 recombinase RecA Machinery gene
  V6U63_RS00350 (V6U63_00350) spx 59162..59560 (+) 399 WP_002886328.1 transcriptional regulator Spx -

Sequence

Protein


Download         Length: 196 a.a.        Molecular weight: 21728.12 Da        Isoelectric Point: 5.6710

>NTDB_id=853229 V6U63_RS00330 WP_002886323.1 55301..55891(+) (ruvA) [Streptococcus salivarius strain KSS3]
MYDYIKGTLVKITAKYIVIEANGLGYIVTVANPYSFSDQMNQTIQVYLHQVIRDDAHLLFGFHTEDEKEVFLKLISVSGI
GPTTALAIVAVDDNQGLVAAVDNSDIKYLMKFPKIGKKTAQQMVLDLAGKFAELPTETTKTTPSQPEGNHQLDEAMEALI
ALGYKATELKKIKAFFEGTNETAEQYIKSALKMLMK

Nucleotide


Download         Length: 591 bp        

>NTDB_id=853229 V6U63_RS00330 WP_002886323.1 55301..55891(+) (ruvA) [Streptococcus salivarius strain KSS3]
ATGTATGATTACATCAAGGGAACTCTAGTGAAAATTACCGCCAAGTATATTGTTATAGAAGCAAACGGCTTAGGTTATAT
TGTCACTGTAGCGAATCCATATAGTTTTTCTGACCAAATGAATCAGACTATCCAAGTCTATCTTCATCAGGTTATTAGAG
ACGATGCCCACCTTCTTTTTGGTTTCCATACTGAAGATGAAAAAGAGGTCTTCCTTAAGCTTATTTCAGTTTCTGGAATA
GGTCCGACGACTGCCCTAGCCATTGTTGCTGTAGATGATAATCAAGGCTTGGTTGCTGCTGTTGATAATAGTGACATCAA
GTACTTGATGAAGTTTCCAAAGATTGGTAAAAAGACAGCTCAACAAATGGTTCTGGATTTGGCAGGGAAATTTGCAGAGT
TACCAACAGAAACGACCAAGACGACACCAAGTCAACCTGAAGGGAATCATCAATTGGATGAGGCTATGGAAGCCTTGATT
GCTCTTGGTTATAAAGCCACAGAACTTAAGAAAATCAAGGCCTTCTTCGAAGGAACTAATGAAACGGCAGAGCAATACAT
TAAATCGGCTCTTAAAATGTTGATGAAATGA

Domains

Predicted by InterProScan.

RuvA N terminal domain (RuvA_N)

(1-61)

RuvA, C-terminal domain (RuvA_C)

(152-195)

Helix-hairpin-helix domain (HHH_5)

(71-127)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ruvA Streptococcus pneumoniae TIGR4

65

100

0.663
  ruvA Streptococcus pneumoniae R6

65

100

0.663
  ruvA Streptococcus pneumoniae D39

65

100

0.663
  ruvA Bacillus subtilis subsp. subtilis str. 168

40.887

100

0.423