Detailed information    

insolico Bioinformatically predicted

Overview

Name   codY   Type   Regulator
Locus tag   V6U62_RS01980 Genome accession   NZ_CP145860
Coordinates   374407..375192 (+) Length   261 a.a.
NCBI ID   WP_002884784.1    Uniprot ID   -
Organism   Streptococcus salivarius strain KSS2     
Function   repress the expression of comX (predicted from homology)   
Competence regulation

Genomic Context

Location: 369407..380192
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  V6U62_RS01955 (V6U62_01945) - 369487..370227 (+) 741 WP_272159210.1 LPXTG cell wall anchor domain-containing protein -
  V6U62_RS01960 (V6U62_01950) pflA 370414..371214 (+) 801 WP_021143691.1 pyruvate formate-lyase-activating protein -
  V6U62_RS01965 (V6U62_01955) - 371284..372036 (+) 753 WP_014634961.1 hypothetical protein -
  V6U62_RS01970 (V6U62_01960) - 372115..372567 (-) 453 WP_002891687.1 universal stress protein -
  V6U62_RS01975 (V6U62_01965) - 372927..374141 (+) 1215 WP_002884715.1 pyridoxal phosphate-dependent aminotransferase -
  V6U62_RS01980 (V6U62_01970) codY 374407..375192 (+) 786 WP_002884784.1 GTP-sensing pleiotropic transcriptional regulator CodY Regulator
  V6U62_RS01985 (V6U62_01975) - 375258..375809 (+) 552 WP_037611919.1 cysteine hydrolase family protein -
  V6U62_RS01990 (V6U62_01980) - 375966..377405 (+) 1440 WP_022496408.1 6-phospho-beta-glucosidase -
  V6U62_RS01995 (V6U62_01985) - 377600..378808 (+) 1209 WP_272159211.1 glycosyltransferase -
  V6U62_RS02000 (V6U62_01990) - 378812..379693 (+) 882 WP_037611917.1 glycosyltransferase family 2 protein -

Sequence

Protein


Download         Length: 261 a.a.        Molecular weight: 28829.85 Da        Isoelectric Point: 4.3715

>NTDB_id=853146 V6U62_RS01980 WP_002884784.1 374407..375192(+) (codY) [Streptococcus salivarius strain KSS2]
MANLLAKTRKITSILQRSVDSLEGDLPYNNMAAQLADIIDCNAAIVNGGGALLGFAMKYKTNNDRVEEFFEAKQLPEEYT
RGISRVYDTQENIGIDSDLTIFPVESKDDFPDGLTTIAPIYGGGMRLGSFIIWRNDHDFVDEDLILVEIASTVVGLQLLN
LQTENLEETIRKQTAINMAINTLSYSEIKAVSAILNELDGLEGRLTASVIADRIGITRSVIVNALRKLESAGIIESRSLG
MKGTYLKVLNEGIYDKLKEYE

Nucleotide


Download         Length: 786 bp        

>NTDB_id=853146 V6U62_RS01980 WP_002884784.1 374407..375192(+) (codY) [Streptococcus salivarius strain KSS2]
ATGGCAAATTTGCTGGCTAAAACACGTAAAATTACATCTATCTTGCAACGCTCAGTGGATAGCTTGGAAGGCGATCTTCC
ATATAACAACATGGCTGCTCAGTTAGCAGATATCATTGATTGTAATGCTGCTATCGTCAATGGTGGTGGTGCTCTCCTTG
GTTTTGCCATGAAATACAAAACCAACAATGACCGTGTAGAAGAGTTTTTTGAAGCTAAACAACTTCCAGAGGAATATACT
CGTGGTATTAGTCGTGTTTATGATACTCAAGAAAACATTGGTATTGACAGTGACTTGACCATTTTCCCAGTGGAATCAAA
AGATGATTTCCCAGACGGTTTGACTACAATTGCACCTATCTATGGTGGTGGTATGCGTCTCGGTTCTTTCATTATTTGGC
GTAACGACCATGATTTTGTGGATGAAGATCTTATCTTGGTTGAGATTGCCTCTACGGTTGTTGGTTTGCAGTTGTTGAAC
CTTCAAACAGAGAACTTGGAAGAAACAATTCGTAAACAAACAGCTATCAACATGGCAATTAATACCTTGTCTTACTCAGA
AATCAAGGCAGTTTCAGCTATCTTGAATGAGTTGGACGGTTTGGAAGGTCGCTTGACAGCGTCTGTTATCGCTGACCGTA
TCGGAATTACACGTTCAGTTATCGTTAATGCCCTTCGTAAGTTGGAATCAGCTGGTATTATTGAGAGCCGTTCACTCGGT
ATGAAAGGGACTTATCTTAAAGTCCTTAACGAAGGTATCTACGATAAATTGAAAGAATACGAATAA

Domains

Predicted by InterProScan.

CodY GAF-like domain (CodY)

(3-182)

CodY helix-turn-helix domain (HTH_CodY)

(201-261)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  codY Lactococcus lactis subsp. lactis strain DGCC12653

64.981

98.467

0.64
  codY Bacillus subtilis subsp. subtilis str. 168

53.036

94.636

0.502