Detailed information    

insolico Bioinformatically predicted

Overview

Name   comEC   Type   Machinery gene
Locus tag   QYQ96_RS05055 Genome accession   NZ_CP129421
Coordinates   1066928..1069171 (+) Length   747 a.a.
NCBI ID   WP_304572629.1    Uniprot ID   -
Organism   Vibrio metoecus strain ZF102     
Function   ssDNA transport through the inner membrane (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1061928..1074171
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QYQ96_RS05030 (QYQ96_05030) - 1062351..1062926 (-) 576 WP_000999600.1 PilZ domain-containing protein -
  QYQ96_RS05035 (QYQ96_05035) lolC 1063102..1064310 (+) 1209 WP_304572627.1 lipoprotein-releasing ABC transporter permease subunit LolC -
  QYQ96_RS05040 (QYQ96_05040) lolD 1064303..1064989 (+) 687 WP_055030331.1 lipoprotein-releasing ABC transporter ATP-binding protein LolD -
  QYQ96_RS05045 (QYQ96_05045) lolE 1064990..1066234 (+) 1245 WP_304572628.1 lipoprotein-releasing ABC transporter permease subunit LolE -
  QYQ96_RS05050 (QYQ96_05050) - 1066389..1066919 (-) 531 WP_009355280.1 DUF2062 domain-containing protein -
  QYQ96_RS05055 (QYQ96_05055) comEC 1066928..1069171 (+) 2244 WP_304572629.1 DNA internalization-related competence protein ComEC/Rec2 Machinery gene
  QYQ96_RS05060 (QYQ96_05060) msbA 1069202..1070950 (+) 1749 WP_055044428.1 lipid A ABC transporter ATP-binding protein/permease MsbA -
  QYQ96_RS05065 (QYQ96_05065) lpxK 1070953..1071960 (+) 1008 WP_304572630.1 tetraacyldisaccharide 4'-kinase -
  QYQ96_RS05070 (QYQ96_05070) - 1071941..1072120 (+) 180 WP_000350067.1 Trm112 family protein -
  QYQ96_RS05075 (QYQ96_05075) kdsB 1072120..1072878 (+) 759 WP_304572631.1 3-deoxy-manno-octulosonate cytidylyltransferase -

Sequence

Protein


Download         Length: 747 a.a.        Molecular weight: 84887.22 Da        Isoelectric Point: 8.8229

>NTDB_id=853146 QYQ96_RS05055 WP_304572629.1 1066928..1069171(+) (comEC) [Vibrio metoecus strain ZF102]
MTLLSNYWSLISFSITLLSAPYWPWMPTWGWAWFCLILIGVLSYYRACRKLLGFALAIFTVVCHGNLMRDQSNMLSQAGS
DSIIKGQVDSFFTQTRYAYEGLVLIHEVNGQTLNRLMWPRVRLTAPVALKPNEQFEFTVVFKPIVGRLNETGFDLEAHSL
TQSVLARAVVSPNTTYQIVPQHSLRSSLLTQLELFTQNSPYQGLILALTFGERKGIGEQEWQALRNSGLIHLVAISGLHI
GIAFSVGYLLGKGLMRLHGKLLWSPFVVGALLAVLYAWLAGFTIPTQRALIMCLLNVGLVILGFPLSALKRILLTLCAVL
VWSPFASLSNSFWMSFLAVAIVLYQLANQEKRQAWWKALLWAQLTLVCLMAPVTAYFFGGLSMTSVVYNLLFIPWFSVVI
VPALFVGLFLNVTMSYWATLYWPWVDWTFYPLDWALQFADVGWVVIPKTVQGFVAALVVISLLYRVMSLRACILAWCLAV
LWWWFPSVTPRWRMDVLDVGHGLAIVIEQDKRAIIYDTGSSWSGGSYVESLIEPILQQRGIRRLDGLILSHLDNDHAGDW
QSLAKRWQPEWIRASQVDVAFMPCMRGERWQWQSLDFQVLWPPRLVNRAYNQHSCVIRMTDLQSNHSVLLSGDVTAMGEW
LLARGGALLSSEVMIVPHHGSKTSSTAEFIAKVEPRMAIASLAKDNRWNLPNPQVVERYQSQQSDWLDTGHAGQISLFFY
PDQFDWFTQRGVGWVPWYRQMLRKGVE

Nucleotide


Download         Length: 2244 bp        

>NTDB_id=853146 QYQ96_RS05055 WP_304572629.1 1066928..1069171(+) (comEC) [Vibrio metoecus strain ZF102]
ATGACTCTCTTGTCGAATTACTGGTCGCTTATCTCTTTTTCGATCACCTTGCTTTCTGCACCGTATTGGCCTTGGATGCC
GACATGGGGCTGGGCTTGGTTTTGCCTTATCCTGATTGGCGTGCTCAGTTATTACCGAGCTTGCCGCAAACTCCTTGGCT
TCGCGTTGGCCATATTCACTGTCGTGTGCCATGGCAACCTAATGCGAGATCAATCCAACATGCTCTCTCAAGCAGGCTCG
GATAGTATCATAAAAGGTCAGGTTGACAGCTTTTTTACGCAAACTCGTTACGCATATGAGGGTTTAGTCTTGATTCATGA
GGTGAATGGTCAAACCTTAAACAGACTGATGTGGCCTCGTGTACGCTTAACGGCTCCAGTAGCGCTAAAACCGAATGAGC
AGTTCGAATTTACGGTTGTATTTAAGCCCATTGTGGGGCGTCTTAATGAAACTGGCTTTGATTTAGAAGCCCACTCTCTG
ACTCAATCGGTTCTTGCGCGAGCGGTTGTCAGCCCGAATACGACATACCAGATTGTGCCGCAACATAGCCTACGCTCCTC
TTTACTGACGCAGCTTGAGTTATTCACCCAAAACAGCCCTTATCAAGGGTTGATATTAGCGCTGACGTTTGGTGAAAGAA
AAGGGATTGGAGAACAAGAATGGCAAGCCTTGCGCAACAGCGGCTTAATTCACTTGGTGGCGATTTCTGGCTTACATATT
GGTATTGCTTTCAGTGTTGGGTACTTATTAGGCAAGGGGCTGATGCGTCTGCATGGCAAATTGTTGTGGTCTCCTTTCGT
GGTGGGTGCATTATTAGCCGTGTTATACGCATGGCTCGCGGGGTTCACTATACCAACCCAGCGTGCGCTGATTATGTGCT
TGCTGAATGTGGGATTGGTGATCTTGGGGTTTCCTCTTTCAGCATTAAAACGGATCCTGCTGACGTTGTGTGCGGTTTTA
GTTTGGTCGCCCTTTGCATCGCTTTCAAACAGTTTTTGGATGTCATTTCTCGCCGTTGCGATTGTGTTGTATCAATTGGC
CAATCAAGAGAAGCGTCAGGCTTGGTGGAAAGCGTTATTGTGGGCGCAACTGACTCTTGTCTGTTTAATGGCGCCAGTCA
CCGCATACTTTTTCGGTGGATTAAGCATGACGTCCGTGGTGTACAATTTACTGTTTATCCCTTGGTTCTCCGTGGTGATT
GTTCCCGCTTTGTTTGTGGGTTTGTTTCTCAACGTGACGATGTCGTATTGGGCGACGCTTTATTGGCCTTGGGTCGACTG
GACGTTCTATCCCCTCGATTGGGCGCTGCAGTTTGCGGATGTAGGATGGGTGGTGATACCGAAAACCGTACAAGGTTTCG
TGGCTGCCTTAGTCGTGATCAGTTTGTTGTACCGAGTGATGAGCTTACGAGCTTGCATTTTGGCATGGTGTCTTGCGGTG
CTGTGGTGGTGGTTTCCTTCTGTCACGCCTCGGTGGCGCATGGATGTTTTGGATGTCGGGCACGGTTTAGCCATCGTGAT
TGAGCAAGATAAGCGCGCCATTATCTATGATACGGGGAGCAGTTGGTCGGGAGGCAGTTATGTAGAAAGTCTGATCGAGC
CCATTTTGCAACAGCGGGGTATTCGCCGGCTCGATGGATTGATTCTAAGTCACCTCGATAATGATCATGCCGGAGATTGG
CAAAGTTTGGCCAAGCGTTGGCAACCGGAATGGATACGTGCAAGCCAAGTTGATGTGGCGTTTATGCCCTGTATGCGCGG
TGAGCGCTGGCAATGGCAGTCATTAGATTTCCAAGTACTATGGCCTCCGAGGCTGGTGAATCGAGCCTACAATCAGCATT
CGTGTGTGATTCGCATGACCGATCTCCAATCTAACCATTCCGTGTTGTTATCTGGGGATGTCACCGCCATGGGAGAATGG
CTACTTGCTCGTGGAGGTGCGCTTTTATCGAGCGAAGTGATGATAGTGCCTCATCACGGCAGCAAAACCTCATCCACCGC
TGAGTTTATTGCGAAAGTCGAACCACGGATGGCGATTGCTTCCCTCGCCAAAGATAACCGCTGGAATTTGCCTAATCCAC
AAGTAGTGGAGCGTTATCAAAGCCAGCAATCTGATTGGCTAGATACTGGCCACGCGGGACAAATCAGTCTGTTTTTCTAT
CCAGATCAGTTTGATTGGTTTACTCAGCGTGGAGTTGGCTGGGTGCCATGGTATAGGCAGATGCTGCGTAAAGGAGTAGA
ATGA

Domains

Predicted by InterproScan.

Competence protein (Competence)

(208-464)

Metallo-beta-lactamase superfamily (Lactamase_B)

(499-672)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comEC Vibrio cholerae strain A1552

78.715

100

0.787
  comEC Vibrio parahaemolyticus RIMD 2210633

41.036

100

0.414
  comEC Vibrio campbellii strain DS40M4

40.16

100

0.404