Detailed information    

insolico Bioinformatically predicted

Overview

Name   comM   Type   Machinery gene
Locus tag   QVN17_RS09980 Genome accession   NZ_CP129403
Coordinates   2032508..2034028 (+) Length   506 a.a.
NCBI ID   WP_002883134.1    Uniprot ID   A0A0H3GGF6
Organism   Klebsiella pneumoniae subsp. pneumoniae strain Kp3739_LBHALD     
Function   require for natural transformation (predicted from homology)   
Unclear

Genomic Context

Location: 2027508..2039028
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QVN17_RS09960 (QVN17_09960) ilvE 2029068..2029997 (-) 930 WP_002883171.1 branched-chain-amino-acid transaminase -
  QVN17_RS09965 (QVN17_09965) ilvM 2030014..2030271 (-) 258 WP_002883170.1 acetolactate synthase 2 small subunit -
  QVN17_RS09970 (QVN17_09970) ilvG 2030268..2031914 (-) 1647 WP_004895123.1 acetolactate synthase 2 catalytic subunit -
  QVN17_RS28080 ilvX 2031917..2031970 (-) 54 WP_201281575.1 peptide IlvX -
  QVN17_RS09975 (QVN17_09975) ilvL 2032055..2032153 (-) 99 WP_001311244.1 ilv operon leader peptide -
  QVN17_RS09980 (QVN17_09980) comM 2032508..2034028 (+) 1521 WP_002883134.1 YifB family Mg chelatase-like AAA ATPase Machinery gene
  QVN17_RS09985 (QVN17_09985) - 2034054..2034392 (-) 339 WP_004146520.1 DUF413 domain-containing protein -
  QVN17_RS09990 (QVN17_09990) hdfR 2034511..2035332 (+) 822 WP_019704850.1 HTH-type transcriptional regulator HdfR -
  QVN17_RS10005 (QVN17_10005) - 2035688..2035885 (-) 198 Protein_1948 5-amino-6-(5-phospho-D-ribitylamino)uracil phosphatase YigB -
  QVN17_RS10010 (QVN17_10010) xerC 2035885..2036787 (-) 903 WP_002883396.1 tyrosine recombinase XerC -
  QVN17_RS10015 (QVN17_10015) - 2036784..2037491 (-) 708 WP_002883395.1 DUF484 domain-containing protein -
  QVN17_RS10020 (QVN17_10020) dapF 2037488..2038312 (-) 825 WP_002883394.1 diaminopimelate epimerase -
  QVN17_RS10025 (QVN17_10025) - 2038348..2038551 (-) 204 WP_002883392.1 lipoprotein -
  QVN17_RS10030 (QVN17_10030) cyaY 2038698..2039018 (+) 321 WP_002883389.1 iron donor protein CyaY -

Sequence

Protein


Download         Length: 506 a.a.        Molecular weight: 55187.59 Da        Isoelectric Point: 8.3554

>NTDB_id=853058 QVN17_RS09980 WP_002883134.1 2032508..2034028(+) (comM) [Klebsiella pneumoniae subsp. pneumoniae strain Kp3739_LBHALD]
MSLAIVYTRAALGIEAPLITVEVHLSNGLPGLTMVGLPETTVKEARDRVRSALINSGYAFPAKKITINLAPADLPKEGGR
YDLPIALALLVASEQLNTTRLNQYEFVGELALTGGLRGVPGAIPSAMEAIKAGRRIVVSSDNAAEVGLIGGSDCLVADHL
QEVCAFLAGQTSLSPPLAEAPARDERYEDLLDVIGQQQGKRALEIVAAGGHNLLLIGPPGTGKTMLASRLPGLLPPLSNQ
EALESAAIQSLVNLHTAKTRWRQRPFRAPHHSASLAAMVGGGSIPVPGEISLAHNGVLFLDELPEFERRVLDALREPIES
GKIHISRSRAKIDYPARFQLIAAMNPSPTGHYQGKHNRASPEQTLRYLGRLSGPFLDRFDLSLEIPLPPPGILSQGSQGE
ESSATVRQRVLAARERQMLRQNKLNAHLENREMKNCCRLRREDAVWLEQTLTQLGLSIRAWQRLLKVARTIADLAEVEEI
ERCHLQEALSYRAIDRMLNHLQKMMA

Nucleotide


Download         Length: 1521 bp        

>NTDB_id=853058 QVN17_RS09980 WP_002883134.1 2032508..2034028(+) (comM) [Klebsiella pneumoniae subsp. pneumoniae strain Kp3739_LBHALD]
ATGTCGCTCGCTATCGTCTATACTCGCGCGGCGCTCGGTATCGAAGCGCCATTGATTACCGTTGAGGTTCATCTCAGCAA
CGGTCTTCCTGGTCTAACTATGGTCGGGCTGCCGGAAACCACCGTGAAAGAGGCCCGCGACCGGGTCCGCAGCGCCCTGA
TCAACAGCGGCTACGCTTTTCCTGCGAAGAAGATAACCATTAACCTGGCGCCAGCGGATCTGCCCAAAGAAGGCGGACGA
TACGATCTGCCCATCGCTCTCGCGCTTCTCGTTGCCTCAGAGCAGCTCAACACGACGCGACTGAATCAATATGAGTTTGT
GGGCGAACTCGCCCTTACAGGTGGGTTACGAGGCGTTCCAGGGGCGATCCCCAGCGCAATGGAGGCCATCAAAGCCGGCC
GGCGCATTGTCGTCTCCTCTGACAATGCGGCGGAGGTCGGCCTGATCGGCGGCAGCGATTGTCTGGTCGCCGACCATCTG
CAGGAGGTTTGCGCATTTCTTGCGGGGCAGACATCGCTTTCGCCGCCTCTCGCCGAGGCGCCTGCTCGGGATGAACGCTA
CGAAGATCTGCTCGATGTTATCGGCCAGCAGCAGGGCAAACGAGCGCTGGAGATTGTGGCCGCCGGTGGTCACAACCTGC
TCCTGATAGGCCCGCCCGGGACCGGGAAAACCATGCTAGCCAGCCGACTCCCCGGTCTCCTGCCGCCATTAAGCAATCAG
GAAGCGCTGGAGAGCGCGGCCATACAGAGTCTGGTCAATCTCCACACCGCAAAGACGCGGTGGCGTCAGAGGCCGTTCCG
CGCCCCCCACCATAGCGCCTCGCTGGCAGCGATGGTGGGCGGCGGCTCGATACCGGTCCCCGGTGAGATTTCCCTGGCCC
ATAATGGCGTGCTGTTTCTTGATGAACTGCCGGAGTTTGAGCGGCGGGTACTGGATGCGCTACGCGAACCCATTGAGTCA
GGCAAGATCCACATATCACGCTCGCGCGCCAAAATTGACTATCCGGCGCGCTTTCAGCTTATTGCAGCGATGAATCCAAG
CCCGACAGGACATTATCAGGGTAAACATAATCGTGCATCGCCGGAACAGACATTGCGCTACCTTGGACGCCTGTCAGGCC
CCTTCCTCGACCGCTTCGATCTTTCCTTAGAGATCCCATTGCCACCGCCAGGAATACTGAGTCAGGGCTCGCAGGGCGAA
GAATCGAGCGCAACGGTCCGGCAGCGGGTGCTGGCGGCGCGTGAACGACAAATGCTCAGGCAAAATAAACTCAATGCCCA
TCTTGAGAATCGTGAAATGAAGAACTGCTGTCGCTTAAGGCGGGAGGATGCTGTCTGGCTGGAACAGACGCTAACGCAGC
TGGGGCTTTCTATTCGCGCCTGGCAGCGTCTGTTAAAGGTTGCGAGAACCATTGCCGATCTGGCAGAGGTTGAAGAGATT
GAACGCTGTCATTTGCAGGAGGCGCTCAGCTATCGGGCAATAGATCGGATGCTCAACCATCTGCAGAAAATGATGGCGTA
A

Domains

Predicted by InterproScan.

Subunit ChlI of Mg-chelatase (ChlI)

(21-142)

Magnesium chelatase, subunit ChlI (Mg_chelatase)

(189-386)

Magnesium chelatase, subunit ChlI C-terminal (Mg_chelatase_C)

(400-492)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A0H3GGF6

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comM Haemophilus influenzae Rd KW20

60.078

100

0.607
  comM Glaesserella parasuis strain SC1401

59.725

100

0.601
  comM Vibrio cholerae strain A1552

60.04

99.407

0.597
  comM Vibrio campbellii strain DS40M4

59.524

99.605

0.593
  comM Legionella pneumophila str. Paris

50.201

98.419

0.494
  comM Legionella pneumophila strain ERS1305867

50.201

98.419

0.494
  RA0C_RS07335 Riemerella anatipestifer ATCC 11845 = DSM 15868

44.488

100

0.447