Detailed information NTG0853043

Bioinformatically predicted

Overview

• Name: pilD
• Type: Machinery gene
• Locus tag: QYP03_RS21600
• Genome accession: NZ_CP129402
• Coordinates: 4779318..4780184 (-)
• Length: 288 a.a.
• NCBI ID: WP_046384730.1
• Uniprot ID: A0A4P7Y2K7
• Organism: Pseudomonas veronii strain OST1911
• Function: assembly of type IV pilus (predicted from homology) DNA binding and uptake

Genomic Context

Location: 4774318..4785184

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
QYP03_RS21565 (QYP03_21565)	-	4775068..4775970 (-)	903	WP_288077167.1	GntR family transcriptional regulator	-
QYP03_RS21570 (QYP03_21570)	-	4776138..4776887 (+)	750	WP_102617159.1	TIM barrel protein	-
QYP03_RS21575 (QYP03_21575)	-	4777059..4777526 (+)	468	WP_057005137.1	hypothetical protein	-
QYP03_RS21580 (QYP03_21580)	-	4777523..4778212 (+)	690	WP_126587498.1	energy-coupling factor ABC transporter permease	-
QYP03_RS21585 (QYP03_21585)	-	4778289..4778504 (+)	216	WP_003171680.1	hypothetical protein	-
QYP03_RS21590 (QYP03_21590)	yacG	4778501..4778701 (-)	201	WP_017845472.1	DNA gyrase inhibitor YacG	-
QYP03_RS21595 (QYP03_21595)	coaE	4778698..4779321 (-)	624	WP_046384731.1	dephospho-CoA kinase	-
QYP03_RS21600 (QYP03_21600)	pilD	4779318..4780184 (-)	867	WP_046384730.1	A24 family peptidase	Machinery gene
QYP03_RS21605 (QYP03_21605)	pilC	4780181..4781389 (-)	1209	WP_301555779.1	type II secretion system F family protein	Machinery gene
QYP03_RS21610 (QYP03_21610)	-	4781591..4782004 (+)	414	WP_017845468.1	pilin	-
QYP03_RS21615 (QYP03_21615)	-	4782040..4783449 (+)	1410	WP_301555780.1	O-antigen ligase family protein	-
QYP03_RS21625 (QYP03_21625)	-	4783698..4784003 (+)	306	WP_017845466.1	DUF6388 family protein	-
QYP03_RS21630 (QYP03_21630)	nadC	4784047..4784895 (-)	849	WP_046384727.1	carboxylating nicotinate-nucleotide diphosphorylase	-

Sequence

Protein

• Length: 288 a.a.
• Molecular weight: 31857.15 Da
• Isoelectric Point: 7.9058

>NTDB_id=853043 QYP03_RS21600 WP_046384730.1 4779318..4780184(-) (pilD) [Pseudomonas veronii strain OST1911]
MSLLLSQQPWAFVAMAMVLGLIVGSFLNVLVWRLPKMLEREWRAQAHEVLGLPGDPVGPRYNLMQPNSCCPHCNQPIRPW
ENIPLLSYLMLRGRCAHCREAISARYPLTELACGLISAVVAWHFGFGWQAGAVMLLSWGLLAMSLIDVDHQLLPDVLVLP
LLWLGLMLNSVELLVPLPDALWGAVIGYMSLWTVFWLFKLATGKDGMGYGDFKLLALLGAWGGWQILPMTLLMSSLVGVC
GGLILLRRSKIQAATPMPFGPYLAIAGWIAVLWGGQITDFYLQSVGFK

Nucleotide

• Length: 867 bp

>NTDB_id=853043 QYP03_RS21600 WP_046384730.1 4779318..4780184(-) (pilD) [Pseudomonas veronii strain OST1911]
TTGAGCCTGCTGTTGAGCCAGCAGCCGTGGGCCTTTGTCGCCATGGCAATGGTGCTGGGCTTGATCGTGGGCAGTTTCCT
CAACGTGCTGGTGTGGCGCCTGCCGAAAATGCTTGAACGGGAATGGCGCGCACAGGCCCATGAAGTGCTCGGTTTGCCCG
GCGACCCCGTCGGGCCGAGATACAACCTGATGCAGCCCAATTCCTGCTGCCCACACTGCAACCAGCCGATTCGGCCGTGG
GAAAACATCCCGCTGCTCAGCTACCTGATGCTCCGGGGCCGCTGTGCCCATTGCCGCGAAGCGATCAGTGCGCGTTATCC
CTTGACCGAACTGGCGTGCGGGTTGATCTCGGCCGTGGTGGCCTGGCATTTCGGCTTTGGCTGGCAAGCGGGCGCAGTGA
TGCTGTTGAGCTGGGGCTTGTTGGCGATGAGCCTGATCGACGTCGACCACCAACTGCTGCCCGACGTGCTGGTCCTGCCG
CTGTTGTGGCTGGGGCTGATGCTTAACAGCGTCGAGCTGCTGGTGCCCCTGCCCGATGCACTGTGGGGTGCAGTGATCGG
CTACATGAGCCTGTGGACGGTGTTCTGGCTGTTCAAGCTGGCCACCGGCAAGGACGGCATGGGCTACGGCGACTTCAAGT
TGTTGGCGCTGCTCGGCGCCTGGGGTGGCTGGCAAATCCTGCCGATGACGCTGCTGATGTCATCGCTGGTGGGCGTGTGC
GGCGGGCTGATCCTGCTGCGTCGGAGCAAGATCCAGGCGGCCACGCCGATGCCGTTTGGTCCCTATCTGGCAATTGCCGG
CTGGATTGCCGTGCTCTGGGGTGGTCAAATAACCGACTTCTATTTGCAGTCTGTCGGTTTCAAATGA

Domains

Predicted by InterproScan.

• Bacterial Peptidase A24 N-terminal domain (A24_N_bact) (18-124)

• Type IV leader peptidase family (Peptidase_A24) (134-241)

3D structure

• AlphaFold DB: A0A4P7Y2K7

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
pilD	Vibrio cholerae strain A1552	55.396	96.528	0.535
pilD	Vibrio campbellii strain DS40M4	50.538	96.875	0.49
pilD	Acinetobacter baumannii D1279779	49.27	95.139	0.469
pilD	Acinetobacter nosocomialis M2	48.905	95.139	0.465
pilD	Neisseria gonorrhoeae MS11	48.148	93.75	0.451