Detailed information    

insolico Bioinformatically predicted

Overview

Name   comE/blpR   Type   Regulator
Locus tag   V6T26_RS01725 Genome accession   NZ_CP145858
Coordinates   319281..319970 (-) Length   229 a.a.
NCBI ID   WP_260467798.1    Uniprot ID   -
Organism   Streptococcus salivarius strain KSS11     
Function   activate transcription of early competence genes; regulation of comX expression (predicted from homology)   
Competence regulation

Genomic Context

Location: 314281..324970
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  V6T26_RS01705 (V6T26_01705) - 314349..316097 (+) 1749 WP_410541325.1 ABC transporter ATP-binding protein -
  V6T26_RS01710 (V6T26_01710) - 316257..316487 (+) 231 WP_118189325.1 Blp family class II bacteriocin -
  V6T26_RS01715 (V6T26_01715) - 317462..317863 (+) 402 WP_014634989.1 hypothetical protein -
  V6T26_RS01720 (V6T26_01720) comD/comD3 317950..318699 (-) 750 WP_014634988.1 sensor histidine kinase Regulator
  V6T26_RS01725 (V6T26_01725) comE/blpR 319281..319970 (-) 690 WP_260467798.1 response regulator transcription factor Regulator
  V6T26_RS01730 (V6T26_01730) - 320275..320409 (+) 135 Protein_318 Blp family class II bacteriocin -
  V6T26_RS01735 (V6T26_01735) - 320445..320837 (+) 393 WP_003094909.1 hypothetical protein -
  V6T26_RS01740 (V6T26_01740) - 321206..321502 (+) 297 WP_014634985.1 bacteriocin immunity protein -
  V6T26_RS01745 (V6T26_01745) - 321612..322556 (-) 945 WP_410541175.1 IS30 family transposase -

Sequence

Protein


Download         Length: 229 a.a.        Molecular weight: 26631.93 Da        Isoelectric Point: 9.4564

>NTDB_id=853033 V6T26_RS01725 WP_260467798.1 319281..319970(-) (comE/blpR) [Streptococcus salivarius strain KSS11]
MVLSQELKKYNKDLSIVHTFDKPQQFIEAIDSTTSNQLFFLDIEIKGEKLKGLDIAKIIREKNPYATIIFVTTHSEFMPL
VFDYQVSALDYIDKSLSEIEFRKKITRALAITMKPLGIENDEIFDFQTQHTAIRIPLNQVIYIETSPQKHYVILHGTNNQ
MTFRANLKDLEKASPSLVSCHRSYLINPNNIIRINKLKREVEMTDGSICPFSRTKAKMLMDTFKRRNLQ

Nucleotide


Download         Length: 690 bp        

>NTDB_id=853033 V6T26_RS01725 WP_260467798.1 319281..319970(-) (comE/blpR) [Streptococcus salivarius strain KSS11]
ATGGTATTGTCTCAAGAGTTAAAAAAATACAATAAAGACTTATCTATTGTACACACCTTTGATAAGCCTCAGCAATTTAT
AGAAGCGATTGATTCAACAACTTCTAACCAGCTCTTTTTTCTTGATATCGAAATTAAGGGAGAAAAATTAAAAGGGCTCG
ATATTGCTAAAATCATTAGGGAAAAAAATCCCTACGCTACTATTATCTTTGTCACTACCCACTCAGAGTTTATGCCACTA
GTTTTTGATTACCAAGTATCTGCCCTAGACTATATTGATAAAAGTCTCTCTGAAATAGAATTTAGGAAAAAGATAACCAG
AGCTTTAGCTATAACTATGAAACCACTTGGAATAGAGAATGACGAGATTTTTGATTTTCAAACACAACATACAGCTATTC
GCATACCTTTAAACCAAGTTATCTATATTGAAACTTCTCCGCAAAAGCATTATGTGATACTCCATGGTACAAACAATCAA
ATGACCTTTCGTGCAAATCTAAAGGACCTTGAAAAAGCTAGTCCTTCACTCGTATCTTGCCATCGTTCGTATCTCATTAA
CCCTAACAACATTATAAGAATCAACAAATTAAAACGTGAAGTCGAAATGACTGATGGTAGTATCTGTCCTTTTTCACGTA
CCAAAGCTAAAATGCTGATGGATACTTTTAAAAGAAGGAACCTTCAATGA

Domains

Predicted by InterProScan.

LytTr DNA-binding domain (LytTR)

(133-222)

Response regulator receiver domain (Response_reg)

(3-105)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comE/blpR Streptococcus mutans UA159

45.146

89.956

0.406
  comE/comE2 Streptococcus gordonii strain NCTC7865

39.151

92.576

0.362
  comE/comE1 Streptococcus gordonii str. Challis substr. CH1

39.151

92.576

0.362