Detailed information    

insolico Bioinformatically predicted

Overview

Name   recG/mmsA   Type   Machinery gene
Locus tag   V6T26_RS01470 Genome accession   NZ_CP145858
Coordinates   262051..264069 (+) Length   672 a.a.
NCBI ID   WP_410541314.1    Uniprot ID   -
Organism   Streptococcus salivarius strain KSS11     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 257051..269069
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  V6T26_RS01450 (V6T26_01450) - 258284..259315 (+) 1032 WP_002891816.1 3-deoxy-7-phosphoheptulonate synthase -
  V6T26_RS01455 (V6T26_01455) - 259400..260431 (+) 1032 WP_347096045.1 3-deoxy-7-phosphoheptulonate synthase -
  V6T26_RS01460 (V6T26_01460) acpS 260434..260787 (+) 354 WP_002891813.1 holo-ACP synthase -
  V6T26_RS01465 (V6T26_01465) alr 260815..261918 (+) 1104 WP_368386552.1 alanine racemase -
  V6T26_RS01470 (V6T26_01470) recG/mmsA 262051..264069 (+) 2019 WP_410541314.1 ATP-dependent DNA helicase RecG Machinery gene
  V6T26_RS01475 (V6T26_01475) - 264081..264587 (+) 507 WP_410541315.1 hypothetical protein -
  V6T26_RS01480 (V6T26_01480) - 265207..265644 (+) 438 WP_156247023.1 hypothetical protein -
  V6T26_RS01485 (V6T26_01485) - 265837..266445 (+) 609 WP_073688474.1 DUF2975 domain-containing protein -
  V6T26_RS01490 (V6T26_01490) - 266455..266667 (+) 213 WP_002884695.1 helix-turn-helix domain-containing protein -
  V6T26_RS01495 (V6T26_01495) - 266719..266862 (-) 144 WP_002891800.1 hypothetical protein -
  V6T26_RS01500 (V6T26_01500) - 266866..267834 (-) 969 WP_037599095.1 asparaginase -

Sequence

Protein


Download         Length: 672 a.a.        Molecular weight: 75147.37 Da        Isoelectric Point: 5.5945

>NTDB_id=853028 V6T26_RS01470 WP_410541314.1 262051..264069(+) (recG/mmsA) [Streptococcus salivarius strain KSS11]
MIQLDSPIADLKGFGPKSAEKFTKLDLYTVGDLLLYFPFRYEDFKSKSIFELMDGEKAVITGTVVTPANVQYYGFKRNRL
SFKIKQGEAVIAISFFNQPYLVDKIEMGAEVAIFGKWDQKKSAVTGMKVLAQVEDDMQPVYHVAQGVSQAQLIKAIKAAF
DSGALNLLEESLPQVLLDKYRLMGRQEAVRAMHFPKDLAEYKQALRRTKFEELFYFQMNLQVLKAENKSETNGLAIAYDE
AKIKAKIAALPFPLTEAQQRSLSEILADMKSGAHMNRLLQGDVGSGKTVIASLAMYGAYTAGFQSALMVPTEILAEQHYQ
SLQGLFPELEVVLLTSGMKAADKKVALSKIESGEAQMIVGTHSLIQDAVTYHSLGLVITDEQHRFGVNQRRIFREKGDNP
DVLMMTATPIPRTLAITAFGEMDVSIIDQMPAGRKPIITRWVKHEQLDTVLAWIKGELEKDAQVYFISPLIEESEALDLK
NAVALHQELTEFFGDSATVALMHGRMKNDEKDQIMQDFKDRKSQILVSTTVIEVGVNVPNATVMVIMDADRFGLSQLHQL
RGRVGRGDKQSYCVLVANPKNDTGKKRMQAMCETTDGFVLAEEDLKMRGSGEIFGTRQSGIPEFQVADIVEDYNILEEAR
RVASQIVSDPNWRENPEWQVLGAHLRSQGEFD

Nucleotide


Download         Length: 2019 bp        

>NTDB_id=853028 V6T26_RS01470 WP_410541314.1 262051..264069(+) (recG/mmsA) [Streptococcus salivarius strain KSS11]
ATGATTCAACTAGATTCACCAATTGCGGATTTGAAAGGCTTTGGGCCTAAGTCCGCTGAAAAATTTACCAAATTAGATTT
ATATACGGTTGGGGACCTCTTGCTTTATTTTCCTTTCCGATATGAGGATTTTAAGAGTAAGTCTATCTTTGAACTGATGG
ATGGCGAAAAGGCTGTTATTACGGGAACAGTGGTGACGCCTGCCAATGTGCAGTATTATGGCTTTAAACGGAATCGTCTG
AGTTTTAAAATCAAGCAAGGAGAGGCTGTGATTGCCATTAGTTTCTTCAACCAACCTTATCTTGTGGATAAGATTGAGAT
GGGGGCAGAAGTAGCTATTTTTGGCAAATGGGACCAGAAGAAGTCTGCTGTGACTGGTATGAAAGTTCTGGCTCAAGTTG
AGGACGATATGCAGCCAGTCTACCATGTGGCCCAGGGTGTTAGTCAGGCCCAACTGATAAAGGCCATAAAGGCAGCTTTT
GATAGTGGGGCCCTTAATTTGTTGGAGGAAAGTCTCCCTCAGGTGCTGCTGGACAAGTACCGTCTCATGGGACGTCAAGA
GGCTGTGCGTGCCATGCATTTTCCGAAAGATTTGGCTGAATATAAGCAGGCTCTACGTAGGACCAAGTTTGAGGAACTCT
TTTATTTCCAGATGAATTTACAGGTACTGAAGGCTGAAAATAAGTCCGAAACCAATGGTCTAGCAATTGCTTACGATGAA
GCCAAAATCAAAGCCAAAATTGCAGCATTACCATTCCCCTTAACAGAAGCCCAACAGCGCAGTTTATCGGAAATCCTAGC
TGATATGAAATCTGGGGCTCATATGAACCGTCTCTTGCAAGGAGATGTGGGCTCAGGGAAAACAGTTATCGCTAGCTTGG
CTATGTATGGGGCCTATACGGCAGGATTTCAGTCTGCCCTCATGGTACCGACGGAAATCTTAGCAGAGCAGCATTATCAG
AGTTTACAGGGGCTTTTTCCTGAGTTAGAGGTAGTGCTCCTAACTTCTGGAATGAAGGCGGCGGATAAGAAAGTAGCCCT
TTCCAAAATCGAGTCTGGGGAGGCTCAGATGATTGTGGGAACCCACTCGTTGATTCAAGATGCAGTGACTTATCATAGTC
TTGGACTAGTCATTACCGATGAACAGCACCGATTTGGGGTTAATCAACGTCGTATTTTCCGTGAGAAAGGTGACAACCCT
GACGTCCTCATGATGACAGCGACCCCTATCCCTAGGACTTTGGCGATCACTGCCTTTGGGGAGATGGATGTATCTATCAT
TGACCAGATGCCAGCTGGACGTAAGCCCATCATCACCCGTTGGGTTAAACATGAGCAGTTAGATACCGTATTGGCTTGGA
TTAAGGGGGAGTTGGAAAAAGATGCTCAGGTCTATTTTATTTCTCCTCTGATTGAAGAGTCTGAGGCTCTTGATTTGAAA
AATGCGGTAGCTCTTCATCAGGAACTCACAGAGTTCTTTGGGGATTCAGCTACAGTAGCTCTGATGCACGGTCGTATGAA
AAATGATGAAAAAGACCAAATTATGCAAGATTTCAAGGACAGAAAATCTCAGATTTTAGTATCAACCACAGTTATCGAAG
TAGGGGTTAACGTGCCAAATGCTACAGTTATGGTCATTATGGATGCGGATCGTTTTGGACTTAGCCAGCTTCACCAGCTT
CGAGGGCGTGTAGGTCGTGGCGATAAGCAGTCCTACTGTGTTTTGGTGGCTAATCCTAAAAATGATACTGGTAAAAAACG
CATGCAGGCCATGTGTGAGACCACGGATGGCTTTGTTCTAGCTGAGGAGGATCTTAAAATGCGTGGCTCAGGTGAAATCT
TTGGGACACGTCAGTCAGGTATTCCTGAATTTCAGGTGGCCGATATTGTGGAAGACTATAATATCTTAGAGGAAGCCAGA
CGGGTGGCTAGCCAAATTGTATCTGACCCTAACTGGCGAGAGAATCCTGAATGGCAGGTGCTAGGAGCACATTTGAGAAG
CCAAGGTGAGTTTGATTGA

Domains

Predicted by InterProScan.

Helicase conserved C-terminal domain (Helicase_C)

(459-567)

ATP-dependent DNA helicase RecG, domain 3, C-terminal (RecG_dom3_C)

(594-667)

RecG wedge domain (RecG_wedge)

(11-158)

DEAD/DEAH box helicase (DEAD)

(255-412)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recG/mmsA Streptococcus pneumoniae R6

71.833

99.851

0.717
  recG/mmsA Streptococcus pneumoniae R36A

71.833

99.851

0.717
  recG Bacillus subtilis subsp. subtilis str. 168

49.629

100

0.497
  recG Neisseria meningitidis strain C311

39.552

99.702

0.394