Detailed information
Bioinformatically predicted
Overview
| Name | comA | Type | Machinery gene |
| Locus tag | QYP03_RS05885 | Genome accession | NZ_CP129402 |
| Coordinates | 1356895..1359108 (-) | Length | 737 a.a. |
| NCBI ID | WP_301556366.1 | Uniprot ID | - |
| Organism | Pseudomonas veronii strain OST1911 | ||
| Function | ssDNA transport through the inner membrane (predicted from homology) DNA binding and uptake |
||
Related MGE
Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.
Gene-MGE association summary
| MGE type | MGE coordinates | Gene coordinates | Relative position | Distance (bp) |
|---|---|---|---|---|
| Prophage | 1333811..1359108 | 1356895..1359108 | within | 0 |
Gene organization within MGE regions
Location: 1333811..1359108
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| QYP03_RS05715 (QYP03_05715) | - | 1335054..1335488 (-) | 435 | WP_301556360.1 | hypothetical protein | - |
| QYP03_RS05720 (QYP03_05720) | - | 1335616..1335786 (+) | 171 | Protein_1139 | integrase | - |
| QYP03_RS05725 (QYP03_05725) | - | 1336494..1338158 (+) | 1665 | WP_301556361.1 | hypothetical protein | - |
| QYP03_RS05730 (QYP03_05730) | - | 1338831..1339958 (+) | 1128 | WP_301556362.1 | hypothetical protein | - |
| QYP03_RS05735 (QYP03_05735) | - | 1340126..1341345 (+) | 1220 | WP_227778763.1 | IS3 family transposase | - |
| QYP03_RS05740 (QYP03_05740) | - | 1341610..1342014 (+) | 405 | WP_152032031.1 | hypothetical protein | - |
| QYP03_RS05745 (QYP03_05745) | - | 1342092..1342382 (-) | 291 | WP_301556363.1 | hypothetical protein | - |
| QYP03_RS05750 (QYP03_05750) | - | 1342531..1342845 (-) | 315 | WP_046383008.1 | hypothetical protein | - |
| QYP03_RS05755 (QYP03_05755) | - | 1342951..1343097 (-) | 147 | WP_231589895.1 | hypothetical protein | - |
| QYP03_RS05760 (QYP03_05760) | - | 1343432..1343770 (-) | 339 | WP_046383006.1 | hypothetical protein | - |
| QYP03_RS05765 (QYP03_05765) | - | 1344084..1344488 (+) | 405 | WP_363325613.1 | hypothetical protein | - |
| QYP03_RS05770 (QYP03_05770) | - | 1344520..1344696 (+) | 177 | WP_301556365.1 | hypothetical protein | - |
| QYP03_RS05775 (QYP03_05775) | - | 1344689..1345123 (-) | 435 | WP_046383005.1 | hypothetical protein | - |
| QYP03_RS05780 (QYP03_05780) | - | 1345318..1345689 (-) | 372 | WP_233099115.1 | hypothetical protein | - |
| QYP03_RS05785 (QYP03_05785) | yejK | 1345789..1346795 (+) | 1007 | Protein_1152 | nucleoid-associated protein YejK | - |
| QYP03_RS05790 (QYP03_05790) | - | 1347117..1347317 (-) | 201 | WP_156179907.1 | hypothetical protein | - |
| QYP03_RS05795 (QYP03_05795) | - | 1347450..1347848 (-) | 399 | WP_156179904.1 | hypothetical protein | - |
| QYP03_RS05800 (QYP03_05800) | - | 1347923..1348899 (+) | 977 | Protein_1155 | DNA cytosine methyltransferase | - |
| QYP03_RS05805 (QYP03_05805) | - | 1349009..1349401 (-) | 393 | WP_046383004.1 | hypothetical protein | - |
| QYP03_RS05810 (QYP03_05810) | - | 1349440..1349598 (+) | 159 | WP_156179900.1 | hypothetical protein | - |
| QYP03_RS05815 (QYP03_05815) | - | 1349645..1349845 (+) | 201 | WP_046383003.1 | hypothetical protein | - |
| QYP03_RS05820 (QYP03_05820) | - | 1349917..1350357 (+) | 441 | WP_046383002.1 | hypothetical protein | - |
| QYP03_RS05825 (QYP03_05825) | - | 1350315..1350620 (+) | 306 | Protein_1160 | SAM-dependent methyltransferase | - |
| QYP03_RS05830 (QYP03_05830) | - | 1350680..1350865 (+) | 186 | WP_046383001.1 | hypothetical protein | - |
| QYP03_RS05835 (QYP03_05835) | - | 1350945..1351181 (+) | 237 | Protein_1162 | integrase | - |
| QYP03_RS05845 (QYP03_05845) | - | 1351519..1352190 (+) | 672 | WP_057004407.1 | Bax inhibitor-1/YccA family protein | - |
| QYP03_RS05850 (QYP03_05850) | murB | 1352265..1353284 (-) | 1020 | WP_017848009.1 | UDP-N-acetylmuramate dehydrogenase | - |
| QYP03_RS05855 (QYP03_05855) | - | 1353281..1353745 (-) | 465 | WP_017848010.1 | low molecular weight protein-tyrosine-phosphatase | - |
| QYP03_RS05860 (QYP03_05860) | kdsB | 1353745..1354509 (-) | 765 | WP_017848011.1 | 3-deoxy-manno-octulosonate cytidylyltransferase | - |
| QYP03_RS05865 (QYP03_05865) | - | 1354506..1354691 (-) | 186 | WP_003174668.1 | Trm112 family protein | - |
| QYP03_RS05870 (QYP03_05870) | lpxK | 1354715..1355725 (-) | 1011 | WP_046382926.1 | tetraacyldisaccharide 4'-kinase | - |
| QYP03_RS05875 (QYP03_05875) | - | 1355725..1356153 (-) | 429 | WP_046382925.1 | biopolymer transporter ExbD | - |
| QYP03_RS05880 (QYP03_05880) | exbB | 1356150..1356785 (-) | 636 | WP_046382924.1 | MotA/TolQ/ExbB proton channel family protein | Machinery gene |
| QYP03_RS05885 (QYP03_05885) | comA | 1356895..1359108 (-) | 2214 | WP_301556366.1 | DNA internalization-related competence protein ComEC/Rec2 | Machinery gene |
Sequence
Protein
Download Length: 737 a.a. Molecular weight: 79774.57 Da Isoelectric Point: 10.1353
>NTDB_id=853025 QYP03_RS05885 WP_301556366.1 1356895..1359108(-) (comA) [Pseudomonas veronii strain OST1911]
MFALALGLLALRFLPALPSAGMLLALAVVALMLLPFRTYPLAFFLFGLCWACVSVQWALDDRLRPPLDGQTRWLEGRVSG
LPQQTDSGVRFELSDSRSRNARLPARIRLYWHGGPPVRSGERWRLAVTLKRPSGLLNFHGVDHEAWLLAQRIGATGSVKD
GERLAPARNAWRDAVRQRLMAVDAQGREAGLAALVLGDGSGLTADDWRVLQDTGTVHLLVISGQHIGLLAGLIYALVAAL
ARYGCWPRTWPWLPWACGLAFTAALGYGLLAGFGVPVQRACVMVGLVLLWRLRFRHLGIWWPLLLAFNGVLILEPLASLQ
PGFWLSFAAVAVLGLTFGGRLGRWSAWQAWTRPQWLIAIGLFPVLLVLGLPISLSAPLANLFAVPWISLVVLPLALLGTA
LLAVPFVGAGLLWLAGGALDGLFNALALLAGQLPAWIPAEVPMGYWLVSLVGAVLLLLPKGVPIRLLGWPMLLLAVFPPR
EPVPHGQVDVLQLDVGQGLALILRTRHHTLLYDAGPRSGAVDLGARVVLPSLKRLGVDALDMMLLSHADADHAGGAAAVA
RGLPIKRVVGGETEGLPALLDTQPCISGEQWAWDGVSFELWQWPDAVDGNPKSCVLHVQANGERLLLTGDIDRAAEQAFL
ASTLAVPTDWLQAPHHGSRSSSSWPFLQRLAPKSVLISRGRGNAFGHPHPQVVERYQALGAQVYDSAEQGAVRLRLGAFA
PPIVARSQRRFWREALP
MFALALGLLALRFLPALPSAGMLLALAVVALMLLPFRTYPLAFFLFGLCWACVSVQWALDDRLRPPLDGQTRWLEGRVSG
LPQQTDSGVRFELSDSRSRNARLPARIRLYWHGGPPVRSGERWRLAVTLKRPSGLLNFHGVDHEAWLLAQRIGATGSVKD
GERLAPARNAWRDAVRQRLMAVDAQGREAGLAALVLGDGSGLTADDWRVLQDTGTVHLLVISGQHIGLLAGLIYALVAAL
ARYGCWPRTWPWLPWACGLAFTAALGYGLLAGFGVPVQRACVMVGLVLLWRLRFRHLGIWWPLLLAFNGVLILEPLASLQ
PGFWLSFAAVAVLGLTFGGRLGRWSAWQAWTRPQWLIAIGLFPVLLVLGLPISLSAPLANLFAVPWISLVVLPLALLGTA
LLAVPFVGAGLLWLAGGALDGLFNALALLAGQLPAWIPAEVPMGYWLVSLVGAVLLLLPKGVPIRLLGWPMLLLAVFPPR
EPVPHGQVDVLQLDVGQGLALILRTRHHTLLYDAGPRSGAVDLGARVVLPSLKRLGVDALDMMLLSHADADHAGGAAAVA
RGLPIKRVVGGETEGLPALLDTQPCISGEQWAWDGVSFELWQWPDAVDGNPKSCVLHVQANGERLLLTGDIDRAAEQAFL
ASTLAVPTDWLQAPHHGSRSSSSWPFLQRLAPKSVLISRGRGNAFGHPHPQVVERYQALGAQVYDSAEQGAVRLRLGAFA
PPIVARSQRRFWREALP
Nucleotide
Download Length: 2214 bp
>NTDB_id=853025 QYP03_RS05885 WP_301556366.1 1356895..1359108(-) (comA) [Pseudomonas veronii strain OST1911]
ATGTTCGCGCTTGCACTCGGGCTGCTTGCGCTGCGATTTCTACCCGCACTGCCGTCTGCCGGGATGCTGTTGGCCCTGGC
AGTGGTGGCGTTGATGCTGCTGCCGTTTCGCACTTATCCGCTGGCGTTTTTCCTGTTCGGCTTGTGTTGGGCATGTGTGA
GCGTGCAGTGGGCGCTGGATGACCGCTTGCGTCCGCCGCTCGACGGCCAGACGCGTTGGCTGGAGGGGCGTGTGAGCGGG
TTGCCGCAGCAGACTGACAGCGGCGTGCGTTTCGAACTGAGCGACAGCCGGTCGCGCAACGCCCGCTTGCCCGCGCGCAT
TCGGCTGTACTGGCACGGTGGCCCACCGGTACGCAGCGGTGAGCGTTGGCGCCTCGCGGTGACGCTTAAACGTCCGTCGG
GCCTGCTCAACTTCCATGGCGTCGACCATGAAGCCTGGCTGCTCGCCCAGCGCATCGGCGCCACCGGCTCGGTAAAGGAC
GGCGAACGCCTGGCGCCGGCCCGCAATGCTTGGCGCGACGCGGTCCGTCAGCGCTTGATGGCGGTGGACGCCCAAGGGCG
CGAGGCGGGGCTGGCGGCCCTGGTGCTGGGGGACGGCTCCGGGCTGACGGCCGACGACTGGCGTGTCTTGCAGGACACCG
GCACGGTGCATTTGCTGGTCATTTCCGGCCAGCACATTGGCCTGTTGGCGGGGTTGATCTATGCGCTCGTCGCCGCTCTG
GCGCGCTACGGCTGCTGGCCGCGCACCTGGCCGTGGCTGCCGTGGGCATGTGGCCTGGCGTTTACCGCGGCGTTGGGGTA
CGGCCTGCTGGCGGGGTTCGGCGTGCCGGTGCAGCGCGCCTGTGTAATGGTGGGGCTGGTGTTGCTGTGGCGTTTGCGTT
TCCGTCATCTGGGCATCTGGTGGCCGCTGTTGCTGGCGTTCAATGGTGTGCTGATCCTTGAACCCTTGGCCAGCTTGCAG
CCGGGGTTCTGGTTGTCCTTTGCGGCCGTGGCGGTACTGGGGCTGACGTTCGGCGGTCGGTTAGGCCGCTGGAGTGCTTG
GCAGGCATGGACCCGTCCGCAATGGTTGATAGCCATCGGTCTTTTCCCGGTGTTACTGGTGCTGGGTTTGCCCATCAGCC
TCAGTGCGCCGCTGGCCAATCTATTTGCGGTGCCGTGGATCAGCCTGGTGGTGTTGCCCCTGGCCCTGCTCGGGACGGCA
TTGCTGGCGGTGCCGTTCGTGGGCGCGGGCTTGTTGTGGCTGGCGGGTGGGGCGCTGGACGGCTTGTTCAACGCCCTGGC
GCTGCTGGCAGGGCAATTGCCCGCGTGGATACCGGCCGAGGTGCCCATGGGCTATTGGCTGGTTAGCCTGGTCGGTGCGG
TGTTGCTGTTGCTGCCCAAGGGTGTGCCGATTCGGCTGCTCGGCTGGCCGATGCTGTTGTTGGCGGTGTTCCCGCCGCGC
GAGCCGGTGCCCCACGGGCAGGTGGACGTACTGCAGCTGGATGTCGGGCAGGGGCTGGCGTTGATCCTGCGCACCCGCCA
TCACACCTTGCTCTACGATGCCGGCCCGCGCTCCGGGGCGGTCGATCTCGGCGCGCGGGTGGTGTTGCCGTCGCTGAAGA
GGCTCGGGGTAGACGCTCTGGACATGATGTTACTGAGCCATGCCGATGCCGATCATGCCGGCGGTGCGGCGGCTGTCGCT
CGTGGGCTGCCGATCAAACGGGTCGTCGGTGGCGAAACCGAAGGGTTGCCGGCGCTTCTCGACACTCAGCCTTGTATCAG
CGGTGAACAATGGGCGTGGGACGGCGTGTCCTTTGAATTGTGGCAATGGCCAGACGCAGTTGATGGCAACCCCAAATCCT
GTGTATTGCACGTACAGGCCAATGGCGAGCGCCTGCTGCTCACCGGCGATATCGATCGCGCCGCAGAGCAGGCGTTTCTG
GCCTCGACCCTGGCGGTGCCGACCGATTGGCTGCAAGCCCCTCACCATGGTAGCCGCAGTTCGTCATCCTGGCCGTTTCT
GCAGCGGCTGGCGCCGAAGTCGGTGCTGATTTCCCGAGGGCGCGGCAATGCGTTCGGTCATCCTCATCCACAGGTGGTGG
AGCGCTATCAAGCGTTGGGAGCGCAGGTGTATGACAGCGCCGAACAGGGCGCGGTACGTTTGCGATTGGGCGCCTTCGCG
CCACCGATTGTTGCGCGCAGTCAACGCCGCTTCTGGCGAGAAGCGCTACCGTAA
ATGTTCGCGCTTGCACTCGGGCTGCTTGCGCTGCGATTTCTACCCGCACTGCCGTCTGCCGGGATGCTGTTGGCCCTGGC
AGTGGTGGCGTTGATGCTGCTGCCGTTTCGCACTTATCCGCTGGCGTTTTTCCTGTTCGGCTTGTGTTGGGCATGTGTGA
GCGTGCAGTGGGCGCTGGATGACCGCTTGCGTCCGCCGCTCGACGGCCAGACGCGTTGGCTGGAGGGGCGTGTGAGCGGG
TTGCCGCAGCAGACTGACAGCGGCGTGCGTTTCGAACTGAGCGACAGCCGGTCGCGCAACGCCCGCTTGCCCGCGCGCAT
TCGGCTGTACTGGCACGGTGGCCCACCGGTACGCAGCGGTGAGCGTTGGCGCCTCGCGGTGACGCTTAAACGTCCGTCGG
GCCTGCTCAACTTCCATGGCGTCGACCATGAAGCCTGGCTGCTCGCCCAGCGCATCGGCGCCACCGGCTCGGTAAAGGAC
GGCGAACGCCTGGCGCCGGCCCGCAATGCTTGGCGCGACGCGGTCCGTCAGCGCTTGATGGCGGTGGACGCCCAAGGGCG
CGAGGCGGGGCTGGCGGCCCTGGTGCTGGGGGACGGCTCCGGGCTGACGGCCGACGACTGGCGTGTCTTGCAGGACACCG
GCACGGTGCATTTGCTGGTCATTTCCGGCCAGCACATTGGCCTGTTGGCGGGGTTGATCTATGCGCTCGTCGCCGCTCTG
GCGCGCTACGGCTGCTGGCCGCGCACCTGGCCGTGGCTGCCGTGGGCATGTGGCCTGGCGTTTACCGCGGCGTTGGGGTA
CGGCCTGCTGGCGGGGTTCGGCGTGCCGGTGCAGCGCGCCTGTGTAATGGTGGGGCTGGTGTTGCTGTGGCGTTTGCGTT
TCCGTCATCTGGGCATCTGGTGGCCGCTGTTGCTGGCGTTCAATGGTGTGCTGATCCTTGAACCCTTGGCCAGCTTGCAG
CCGGGGTTCTGGTTGTCCTTTGCGGCCGTGGCGGTACTGGGGCTGACGTTCGGCGGTCGGTTAGGCCGCTGGAGTGCTTG
GCAGGCATGGACCCGTCCGCAATGGTTGATAGCCATCGGTCTTTTCCCGGTGTTACTGGTGCTGGGTTTGCCCATCAGCC
TCAGTGCGCCGCTGGCCAATCTATTTGCGGTGCCGTGGATCAGCCTGGTGGTGTTGCCCCTGGCCCTGCTCGGGACGGCA
TTGCTGGCGGTGCCGTTCGTGGGCGCGGGCTTGTTGTGGCTGGCGGGTGGGGCGCTGGACGGCTTGTTCAACGCCCTGGC
GCTGCTGGCAGGGCAATTGCCCGCGTGGATACCGGCCGAGGTGCCCATGGGCTATTGGCTGGTTAGCCTGGTCGGTGCGG
TGTTGCTGTTGCTGCCCAAGGGTGTGCCGATTCGGCTGCTCGGCTGGCCGATGCTGTTGTTGGCGGTGTTCCCGCCGCGC
GAGCCGGTGCCCCACGGGCAGGTGGACGTACTGCAGCTGGATGTCGGGCAGGGGCTGGCGTTGATCCTGCGCACCCGCCA
TCACACCTTGCTCTACGATGCCGGCCCGCGCTCCGGGGCGGTCGATCTCGGCGCGCGGGTGGTGTTGCCGTCGCTGAAGA
GGCTCGGGGTAGACGCTCTGGACATGATGTTACTGAGCCATGCCGATGCCGATCATGCCGGCGGTGCGGCGGCTGTCGCT
CGTGGGCTGCCGATCAAACGGGTCGTCGGTGGCGAAACCGAAGGGTTGCCGGCGCTTCTCGACACTCAGCCTTGTATCAG
CGGTGAACAATGGGCGTGGGACGGCGTGTCCTTTGAATTGTGGCAATGGCCAGACGCAGTTGATGGCAACCCCAAATCCT
GTGTATTGCACGTACAGGCCAATGGCGAGCGCCTGCTGCTCACCGGCGATATCGATCGCGCCGCAGAGCAGGCGTTTCTG
GCCTCGACCCTGGCGGTGCCGACCGATTGGCTGCAAGCCCCTCACCATGGTAGCCGCAGTTCGTCATCCTGGCCGTTTCT
GCAGCGGCTGGCGCCGAAGTCGGTGCTGATTTCCCGAGGGCGCGGCAATGCGTTCGGTCATCCTCATCCACAGGTGGTGG
AGCGCTATCAAGCGTTGGGAGCGCAGGTGTATGACAGCGCCGAACAGGGCGCGGTACGTTTGCGATTGGGCGCCTTCGCG
CCACCGATTGTTGCGCGCAGTCAACGCCGCTTCTGGCGAGAAGCGCTACCGTAA
3D structure
| Source | ID | Structure |
|---|
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| comA | Pseudomonas stutzeri DSM 10701 |
61.057 |
97.558 |
0.596 |
| comA | Ralstonia pseudosolanacearum GMI1000 |
34.777 |
100 |
0.37 |