Detailed information    

insolico Bioinformatically predicted

Overview

Name   uvrB   Type   Machinery gene
Locus tag   V6T01_RS07510 Genome accession   NZ_CP145856
Coordinates   1645920..1647911 (-) Length   663 a.a.
NCBI ID   WP_041826694.1    Uniprot ID   -
Organism   Streptococcus salivarius strain KSS1     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1640920..1652911
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  V6T01_RS07480 (V6T01_07455) rpsU 1640993..1641169 (-) 177 WP_002884573.1 30S ribosomal protein S21 -
  V6T01_RS07485 (V6T01_07460) - 1641364..1642158 (-) 795 WP_410541388.1 transporter substrate-binding domain-containing protein -
  V6T01_RS07490 (V6T01_07465) - 1642220..1643329 (-) 1110 WP_410541387.1 aminotransferase -
  V6T01_RS07495 (V6T01_07470) - 1643574..1644371 (-) 798 WP_201061298.1 transporter substrate-binding domain-containing protein -
  V6T01_RS07500 (V6T01_07475) - 1644383..1645195 (-) 813 WP_201061300.1 transporter substrate-binding domain-containing protein -
  V6T01_RS07505 (V6T01_07480) - 1645411..1645875 (-) 465 WP_049546232.1 8-oxo-dGTP diphosphatase -
  V6T01_RS07510 (V6T01_07485) uvrB 1645920..1647911 (-) 1992 WP_041826694.1 excinuclease ABC subunit UvrB Machinery gene
  V6T01_RS07515 (V6T01_07490) - 1647901..1648521 (-) 621 WP_410541386.1 hypothetical protein -
  V6T01_RS07520 (V6T01_07495) - 1648592..1649527 (-) 936 WP_410541385.1 CPBP family intramembrane glutamic endopeptidase -
  V6T01_RS07525 (V6T01_07500) - 1649727..1651925 (+) 2199 WP_048673755.1 ABC transporter substrate-binding protein/permease -
  V6T01_RS07530 (V6T01_07505) - 1651925..1652665 (+) 741 WP_060971807.1 amino acid ABC transporter ATP-binding protein -

Sequence

Protein


Download         Length: 663 a.a.        Molecular weight: 76048.11 Da        Isoelectric Point: 4.5858

>NTDB_id=852967 V6T01_RS07510 WP_041826694.1 1645920..1647911(-) (uvrB) [Streptococcus salivarius strain KSS1]
MIDRKEDNQFHLVSKYEPSGDQPQAIEALVDNIEGGEKAQILKGATGTGKTYTMSQVIQRVNKPTLVIAHNKTLAGQLYG
EFKEFFPDNAVEYFVSYYDFYQPEAYVPSSDTYIEKDSSVNDEIDKLRHSATSALLERNDVIVVASVSCIYGLGSPKEYA
DSAVSLRPGQEISRDKLLNDLVDIQFERNDIDFQRGKFRVRGDVVEIFPASRDEHAFRVEFFGDEIDRICEIESLTGRNL
GEVEHLVLFPATHFMTNEEHMEEAIKNIMEEMEAQVKQFEAEGKLIEAQRIRQRTEYDVEMLREMGYTNGVENYSRHMDG
RKEGEPPFTLLDFFPEDFLIMIDESHMTMGQIKGMYNGDQARKKMLVDYGFRLPSALDNRPLRREEFESHVHQIVYVSAT
PGDYEMEQTETVVEQIIRPTGLLDPEVEVRPTMGQMDDLLGEINARTEKGERVFVTTLTKKMAEDLTDYLKEMGVKVKYM
HSDIKTLERTEIIRDLRLGVFDVLIGINLLREGIDVPEVSLVAILDADKEGFLRNERGLIQTIGRAARNSEGHVIMYADK
ITESMQKAMDETARRREIQMAYNKEHGITPQTIKKEIRDLISITKVNEAEVAEDTVDYSAMNKKERQEAIKKLQKQMHEA
AELLDFELAAQIRDMVLELKSMD

Nucleotide


Download         Length: 1992 bp        

>NTDB_id=852967 V6T01_RS07510 WP_041826694.1 1645920..1647911(-) (uvrB) [Streptococcus salivarius strain KSS1]
ATGATAGATAGAAAAGAAGACAACCAATTTCATTTGGTTTCTAAATATGAACCTTCTGGGGACCAACCTCAGGCCATTGA
AGCCTTGGTTGATAATATAGAAGGTGGAGAAAAGGCTCAAATCCTAAAGGGAGCGACAGGGACAGGTAAGACCTATACCA
TGAGTCAGGTCATCCAGCGCGTGAATAAACCAACCTTGGTTATCGCCCATAATAAAACTTTGGCAGGTCAGCTTTATGGA
GAATTCAAGGAGTTTTTCCCAGACAATGCTGTAGAATACTTCGTTTCCTACTATGATTTCTATCAGCCAGAGGCCTATGT
ACCATCATCAGATACCTATATCGAAAAAGATAGCTCTGTAAACGATGAAATTGATAAGCTACGACACTCAGCAACGTCGG
CTCTCCTTGAGCGTAATGATGTTATCGTTGTGGCTTCTGTTTCTTGTATTTACGGTTTGGGTTCACCCAAAGAATATGCT
GATTCAGCAGTCAGCCTTCGACCAGGCCAAGAGATTTCTCGAGACAAGCTGCTAAATGACCTAGTTGATATCCAGTTTGA
GCGAAATGACATTGATTTCCAACGTGGGAAATTCCGTGTACGTGGTGATGTGGTCGAAATCTTTCCTGCCAGCCGTGATG
AGCACGCCTTTCGTGTGGAATTTTTCGGTGATGAGATTGACCGCATCTGTGAGATTGAAAGTTTGACAGGACGCAATCTC
GGTGAAGTTGAGCACCTTGTTCTTTTCCCGGCGACTCACTTTATGACCAATGAAGAGCATATGGAAGAAGCCATCAAGAA
TATTATGGAAGAGATGGAAGCTCAGGTTAAGCAATTTGAAGCTGAGGGTAAGCTCATCGAGGCTCAACGTATCCGCCAAA
GGACAGAATACGATGTTGAAATGCTTCGTGAGATGGGCTACACCAATGGTGTCGAAAACTACTCACGCCACATGGATGGA
CGTAAAGAAGGCGAGCCACCCTTCACCTTGCTTGATTTCTTCCCAGAAGATTTCCTTATCATGATTGATGAAAGTCACAT
GACCATGGGTCAGATTAAGGGAATGTATAACGGGGACCAGGCCCGTAAGAAGATGTTGGTTGATTACGGTTTCCGTTTGC
CATCAGCGCTTGATAACCGTCCACTTCGACGTGAAGAATTTGAGAGTCATGTTCATCAGATTGTCTATGTGTCTGCCACT
CCAGGGGACTATGAGATGGAGCAAACTGAGACTGTCGTTGAGCAAATCATCCGTCCGACAGGGCTTCTTGATCCAGAAGT
CGAAGTGCGTCCAACTATGGGACAAATGGATGACCTCCTTGGTGAGATCAATGCCCGAACTGAAAAAGGCGAGCGTGTCT
TTGTAACCACTTTGACTAAGAAGATGGCTGAAGACTTGACTGACTATCTCAAGGAAATGGGTGTCAAGGTTAAATACATG
CACTCTGACATTAAGACTTTGGAACGTACGGAGATTATCCGTGACTTGCGTCTAGGTGTCTTTGATGTTCTTATCGGTAT
TAACCTTCTTCGTGAAGGGATTGACGTTCCTGAGGTTAGTCTGGTTGCTATTTTGGATGCGGATAAGGAAGGCTTCCTTC
GTAACGAACGTGGACTTATCCAAACGATCGGACGTGCTGCCCGAAATAGCGAAGGTCACGTTATTATGTATGCAGATAAG
ATTACGGAGTCTATGCAAAAAGCCATGGATGAAACAGCTCGCCGTCGTGAAATCCAAATGGCTTATAATAAGGAACACGG
TATCACTCCACAAACGATTAAGAAAGAAATTCGGGACCTTATTTCGATTACCAAGGTCAATGAAGCAGAAGTGGCAGAGG
ATACGGTGGACTACAGTGCTATGAACAAGAAAGAACGCCAAGAAGCCATCAAGAAACTTCAAAAGCAAATGCACGAAGCG
GCAGAACTGCTTGACTTCGAGTTGGCGGCTCAAATCCGTGATATGGTTCTTGAGCTGAAGAGTATGGATTAA

Domains

Predicted by InterProScan.

UvrB/uvrC motif (UVR)

(628-660)

Helicase conserved C-terminal domain (Helicase_C)

(443-549)

Type III restriction enzyme, res subunit (ResIII)

(17-143)

UvrB interaction domain (UvrB_inter)

(164-254)

Ultra-violet resistance protein B (UvrB)

(556-598)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  uvrB Streptococcus pneumoniae R6

85.973

100

0.86
  uvrB Streptococcus pneumoniae D39

85.973

100

0.86
  uvrB Streptococcus pneumoniae TIGR4

85.822

100

0.858