Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssbA   Type   Machinery gene
Locus tag   QYE82_RS11480 Genome accession   NZ_CP129374
Coordinates   2402043..2402552 (-) Length   169 a.a.
NCBI ID   WP_002447681.1    Uniprot ID   -
Organism   Staphylococcus epidermidis strain CSMH-411EB     
Function   ssDNA binding (predicted from homology)   
DNA processing

Related MGE

Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.

Gene-MGE association summary

MGE type MGE coordinates Gene coordinates Relative position Distance (bp)
Prophage 2384593..2407739 2402043..2402552 within 0


Gene organization within MGE regions


Location: 2384593..2407739
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QYE82_RS11350 - 2384593..2384847 (-) 255 WP_001832461.1 GlsB/YeaQ/YmgE family stress response membrane protein -
  QYE82_RS11355 - 2385069..2385329 (+) 261 WP_002437194.1 hypothetical protein -
  QYE82_RS12095 - 2385491..2385642 (+) 152 Protein_2192 hypothetical protein -
  QYE82_RS11360 - 2386070..2386849 (-) 780 WP_162160355.1 pathogenicity island protein -
  QYE82_RS11365 - 2386836..2387264 (-) 429 WP_162160354.1 hypothetical protein -
  QYE82_RS11370 - 2387261..2387779 (-) 519 WP_162160353.1 pathogenicity island protein -
  QYE82_RS11375 - 2388209..2388598 (+) 390 WP_301560414.1 hypothetical protein -
  QYE82_RS11380 - 2388671..2389258 (-) 588 WP_162160352.1 type 1 glutamine amidotransferase family protein -
  QYE82_RS11385 - 2389702..2390415 (+) 714 WP_301560415.1 toxin MazF -
  QYE82_RS11390 - 2390616..2391215 (+) 600 WP_270223746.1 hypothetical protein -
  QYE82_RS11395 - 2391364..2391852 (-) 489 WP_270223747.1 terminase small subunit -
  QYE82_RS11400 - 2391912..2392598 (-) 687 WP_301560416.1 hypothetical protein -
  QYE82_RS11405 - 2392618..2393151 (-) 534 WP_301560417.1 hypothetical protein -
  QYE82_RS11410 - 2393164..2393499 (-) 336 WP_176656083.1 pathogenicity island protein -
  QYE82_RS11415 - 2393842..2394482 (-) 641 Protein_2204 pathogenicity island protein -
  QYE82_RS11420 - 2394482..2394766 (-) 285 WP_301560418.1 pathogenicity island protein -
  QYE82_RS11425 - 2394768..2395130 (-) 363 WP_301560419.1 pathogenicity island protein -
  QYE82_RS11430 - 2395404..2396891 (-) 1488 WP_301560420.1 virulence-associated E family protein -
  QYE82_RS11435 - 2396904..2397776 (-) 873 WP_107380103.1 primase alpha helix C-terminal domain-containing protein -
  QYE82_RS11440 - 2397874..2398215 (-) 342 WP_301560421.1 hypothetical protein -
  QYE82_RS11445 - 2398217..2398576 (-) 360 WP_301560576.1 pathogenicity island protein -
  QYE82_RS11450 - 2398635..2398772 (-) 138 WP_002501460.1 hypothetical protein -
  QYE82_RS11455 - 2398788..2399060 (-) 273 WP_301560422.1 helix-turn-helix domain-containing protein -
  QYE82_RS11460 - 2399064..2399273 (-) 210 WP_145365011.1 helix-turn-helix transcriptional regulator -
  QYE82_RS11465 - 2399422..2400144 (+) 723 WP_301560423.1 helix-turn-helix transcriptional regulator -
  QYE82_RS11470 - 2400163..2401377 (+) 1215 WP_301560424.1 site-specific integrase -
  QYE82_RS11475 rpsR 2401756..2401998 (-) 243 WP_001831354.1 30S ribosomal protein S18 -
  QYE82_RS11480 ssbA 2402043..2402552 (-) 510 WP_002447681.1 single-stranded DNA-binding protein Machinery gene
  QYE82_RS11485 rpsF 2402575..2402871 (-) 297 WP_001831345.1 30S ribosomal protein S6 -
  QYE82_RS11490 - 2403256..2404065 (+) 810 WP_058702974.1 GH25 family lysozyme -
  QYE82_RS11495 - 2404139..2404330 (+) 192 WP_001831355.1 hypothetical protein -
  QYE82_RS11500 ychF 2404563..2405660 (-) 1098 WP_001831336.1 redox-regulated ATPase YchF -
  QYE82_RS11505 - 2405672..2405875 (-) 204 WP_001831361.1 DUF951 domain-containing protein -
  QYE82_RS11510 - 2405896..2406771 (-) 876 WP_002468622.1 mechanosensitive ion channel family protein -

Sequence

Protein


Download         Length: 169 a.a.        Molecular weight: 18671.19 Da        Isoelectric Point: 4.7078

>NTDB_id=852939 QYE82_RS11480 WP_002447681.1 2402043..2402552(-) (ssbA) [Staphylococcus epidermidis strain CSMH-411EB]
MLNRVVLVGRLTKDPEYRTTPSGVSVATFTLAVNRTFTNAQGEREADFINCVVFRRQAENVNNYLSKGSLAGVDGRIQSR
SYENQEGRRIFVTEVVCDSVQFLEPKNAQQGGQRSQNNNFQDYGQGFGGQQSGQNTSYNNNNSSNSNQSDNPFANANGPI
DISDDDLPF

Nucleotide


Download         Length: 510 bp        

>NTDB_id=852939 QYE82_RS11480 WP_002447681.1 2402043..2402552(-) (ssbA) [Staphylococcus epidermidis strain CSMH-411EB]
ATGTTAAATCGAGTTGTATTAGTAGGTCGTCTAACGAAAGATCCAGAATACAGAACCACACCCTCAGGCGTAAGTGTAGC
GACATTTACTCTAGCAGTTAATCGTACTTTCACGAATGCTCAAGGGGAACGCGAAGCTGACTTTATTAACTGTGTAGTCT
TCCGTAGACAAGCAGAAAATGTAAATAACTACTTGTCTAAAGGTAGTTTAGCTGGCGTTGATGGTCGCATACAATCACGT
AGTTATGAAAATCAAGAAGGTCGTCGTATTTTTGTTACTGAAGTCGTATGTGATAGTGTTCAATTCCTTGAACCTAAAAA
CGCACAACAAGGTGGCCAACGTTCACAGAACAATAATTTCCAAGACTACGGTCAAGGATTTGGTGGTCAGCAATCAGGAC
AAAATACATCTTACAACAACAATAATTCATCAAACTCAAATCAGTCGGATAATCCGTTTGCAAATGCTAATGGACCGATT
GATATCAGTGATGATGATTTACCATTCTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(2-103)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssbA Bacillus subtilis subsp. subtilis str. 168

64.607

100

0.68
  ssb Latilactobacillus sakei subsp. sakei 23K

55.747

100

0.574
  ssbB Bacillus subtilis subsp. subtilis str. 168

57.143

66.272

0.379