Detailed information    

insolico Bioinformatically predicted

Overview

Name   dprA   Type   Machinery gene
Locus tag   QYE84_RS08290 Genome accession   NZ_CP129369
Coordinates   1697866..1698732 (-) Length   288 a.a.
NCBI ID   WP_053018899.1    Uniprot ID   -
Organism   Staphylococcus haemolyticus strain CJFE-402M     
Function   ssDNA binding; loading RecA onto ssDNA (predicted from homology)   
DNA processing

Related MGE

Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.

Gene-MGE association summary

MGE type MGE coordinates Gene coordinates Relative position Distance (bp)
ICE 1684981..1733270 1697866..1698732 within 0


Gene organization within MGE regions


Location: 1684981..1733270
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QYE84_RS08230 - 1685107..1685889 (-) 783 WP_037537321.1 phosphatidate cytidylyltransferase -
  QYE84_RS08235 - 1685893..1686663 (-) 771 WP_011275940.1 isoprenyl transferase -
  QYE84_RS08240 frr 1686889..1687443 (-) 555 WP_011275941.1 ribosome recycling factor -
  QYE84_RS08245 pyrH 1687461..1688183 (-) 723 WP_011275942.1 UMP kinase -
  QYE84_RS08250 tsf 1688320..1689198 (-) 879 WP_011275943.1 translation elongation factor Ts -
  QYE84_RS08255 rpsB 1689363..1690151 (-) 789 WP_011275944.1 30S ribosomal protein S2 -
  QYE84_RS08260 codY 1690418..1691191 (-) 774 WP_011275945.1 GTP-sensing pleiotropic transcriptional regulator CodY -
  QYE84_RS08265 hslU 1691213..1692616 (-) 1404 WP_053018901.1 ATP-dependent protease ATPase subunit HslU -
  QYE84_RS08270 hslV 1692676..1693221 (-) 546 WP_011275947.1 ATP-dependent protease subunit HslV -
  QYE84_RS08275 xerC 1693222..1694115 (-) 894 WP_053018900.1 tyrosine recombinase XerC -
  QYE84_RS08280 trmFO 1694287..1695594 (-) 1308 WP_037537326.1 FADH(2)-oxidizing methylenetetrahydrofolate--tRNA-(uracil(54)-C(5))- methyltransferase TrmFO -
  QYE84_RS08285 topA 1695618..1697687 (-) 2070 WP_037537327.1 type I DNA topoisomerase -
  QYE84_RS08290 dprA 1697866..1698732 (-) 867 WP_053018899.1 DNA-processing protein DprA Machinery gene
  QYE84_RS08295 - 1698951..1700180 (-) 1230 WP_053017118.1 aminoacyltransferase -
  QYE84_RS08300 - 1700211..1700462 (-) 252 Protein_1602 cell wall hydrolase -
  QYE84_RS08305 - 1700586..1700651 (-) 66 Protein_1603 YSIRK-type signal peptide-containing protein -
  QYE84_RS08310 sucD 1700906..1701811 (-) 906 WP_011275953.1 succinate--CoA ligase subunit alpha -
  QYE84_RS08315 sucC 1701833..1702999 (-) 1167 WP_053017080.1 ADP-forming succinate--CoA ligase subunit beta -
  QYE84_RS08320 - 1703111..1703878 (-) 768 WP_053017079.1 ribonuclease HII -
  QYE84_RS08325 ylqF 1703862..1704746 (-) 885 WP_053018898.1 ribosome biogenesis GTPase YlqF -
  QYE84_RS08330 - 1704984..1707578 (+) 2595 WP_053018897.1 YfhO family protein -
  QYE84_RS08335 - 1707580..1710189 (+) 2610 WP_053018896.1 YfhO family protein -
  QYE84_RS08340 rplS 1710346..1710696 (-) 351 WP_037537864.1 50S ribosomal protein L19 -
  QYE84_RS08345 trmD 1710801..1711538 (-) 738 WP_037537865.1 tRNA (guanosine(37)-N1)-methyltransferase TrmD -
  QYE84_RS08350 rimM 1711538..1712041 (-) 504 WP_053017074.1 ribosome maturation factor RimM -
  QYE84_RS08355 rpsP 1712160..1712435 (-) 276 WP_011275962.1 30S ribosomal protein S16 -
  QYE84_RS08360 ffh 1712899..1714269 (-) 1371 WP_037557994.1 signal recognition particle protein -
  QYE84_RS08365 - 1714295..1714627 (-) 333 WP_301402000.1 putative DNA-binding protein -
  QYE84_RS08370 ftsY 1714614..1715837 (-) 1224 WP_301402002.1 signal recognition particle-docking protein FtsY -
  QYE84_RS08375 smc 1715834..1719403 (-) 3570 WP_301402004.1 chromosome segregation protein SMC -
  QYE84_RS08380 rnc 1719488..1720225 (-) 738 WP_011275967.1 ribonuclease III -
  QYE84_RS08385 - 1720312..1720545 (-) 234 WP_001830184.1 acyl carrier protein -
  QYE84_RS08390 fabG 1720658..1721395 (-) 738 WP_011275968.1 3-oxoacyl-[acyl-carrier-protein] reductase -
  QYE84_RS08395 fabD 1721385..1722314 (-) 930 WP_037537879.1 ACP S-malonyltransferase -
  QYE84_RS08400 plsX 1722307..1723293 (-) 987 WP_193624290.1 phosphate acyltransferase PlsX -
  QYE84_RS08405 fapR 1723295..1723855 (-) 561 WP_011275971.1 transcription factor FapR -
  QYE84_RS08410 recG 1723991..1726042 (-) 2052 WP_053018892.1 ATP-dependent DNA helicase RecG -
  QYE84_RS08415 - 1726196..1726999 (-) 804 WP_301402006.1 thermonuclease family protein -
  QYE84_RS08420 fakA 1727184..1728842 (-) 1659 WP_053018890.1 fatty acid kinase catalytic subunit FakA -
  QYE84_RS08425 - 1728863..1729231 (-) 369 WP_011275975.1 Asp23/Gls24 family envelope stress response protein -
  QYE84_RS08430 rpmB 1729513..1729701 (+) 189 WP_011275976.1 50S ribosomal protein L28 -
  QYE84_RS08435 - 1729763..1730404 (-) 642 WP_037537890.1 thiamine diphosphokinase -
  QYE84_RS08440 rpe 1730412..1731056 (-) 645 WP_053017067.1 ribulose-phosphate 3-epimerase -
  QYE84_RS08445 rsgA 1731056..1731931 (-) 876 WP_037537893.1 ribosome small subunit-dependent GTPase A -

Sequence

Protein


Download         Length: 288 a.a.        Molecular weight: 33157.01 Da        Isoelectric Point: 8.7791

>NTDB_id=852866 QYE84_RS08290 WP_053018899.1 1697866..1698732(-) (dprA) [Staphylococcus haemolyticus strain CJFE-402M]
MTNNNKLLLKLIWLGYTTQHIHHLLKLNPDFFEFSYTDQIDTIRNWDRMFHNDDFIDKFNNLNEKDILSLLQNHKVSFTT
PFNTNYPRLLKEIYDYPFVLFYQGDPRLLTSSNTLGVVGSRNATEYSAKAMQYLFPKFKQIPLTIISGLAKGADSIAHHF
AIEYQLPTIAVLGFGHMMHYPRETQKLRNIIEEKGLVISEYPPFTSVRRYHFPQRNRLISGLSQGVLITEASVRSGSQIT
IDCALDQNRNIYVLPGSIFNPLTKGNLKRAQEGAMIVTSADDILCDYK

Nucleotide


Download         Length: 867 bp        

>NTDB_id=852866 QYE84_RS08290 WP_053018899.1 1697866..1698732(-) (dprA) [Staphylococcus haemolyticus strain CJFE-402M]
ATGACTAACAACAACAAATTACTTTTGAAATTAATTTGGTTAGGTTATACGACCCAACACATTCATCATTTATTAAAATT
AAATCCTGATTTTTTTGAATTCTCTTATACTGATCAAATAGATACAATAAGAAATTGGGACAGAATGTTTCATAATGATG
ATTTTATTGATAAATTTAATAATTTAAATGAAAAAGATATTTTGTCACTTTTGCAGAATCACAAAGTAAGTTTTACAACA
CCGTTTAACACTAATTATCCTCGACTGTTAAAAGAAATTTATGATTATCCGTTTGTCCTATTTTACCAAGGTGACCCCCG
TTTATTAACATCCTCCAATACATTAGGTGTGGTGGGCTCAAGAAATGCAACAGAATACTCAGCTAAAGCCATGCAATACT
TATTTCCTAAATTTAAACAAATTCCACTAACTATTATTTCCGGTTTGGCAAAAGGTGCTGATAGCATTGCACATCATTTT
GCTATAGAGTATCAATTACCTACTATAGCTGTTTTAGGTTTTGGTCATATGATGCATTACCCTAGAGAAACGCAAAAATT
ACGCAACATAATTGAAGAAAAAGGTTTAGTTATTAGTGAATATCCGCCATTCACTAGTGTTAGGCGATATCACTTTCCGC
AACGCAATCGTTTGATAAGCGGTCTTTCACAAGGGGTTTTAATAACTGAAGCAAGTGTTAGAAGCGGTAGTCAAATTACA
ATTGATTGCGCATTAGACCAAAATAGAAATATATATGTATTACCAGGTTCAATATTTAATCCACTAACTAAAGGTAATTT
GAAACGAGCTCAAGAAGGTGCGATGATTGTAACCTCAGCTGATGATATCCTATGTGATTATAAATAG

Domains

Predicted by InterproScan.

DNA recombination-mediator protein A (DNA_processg_A)

(72-278)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  dprA Staphylococcus aureus MW2

51.943

98.264

0.51
  dprA Staphylococcus aureus N315

51.943

98.264

0.51
  dprA Glaesserella parasuis strain SC1401

37.153

100

0.372