Detailed information    

insolico Bioinformatically predicted

Overview

Name   vraR   Type   Regulator
Locus tag   QYE84_RS05180 Genome accession   NZ_CP129369
Coordinates   1067393..1068022 (+) Length   209 a.a.
NCBI ID   WP_037551137.1    Uniprot ID   -
Organism   Staphylococcus haemolyticus strain CJFE-402M     
Function   repress expression of competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 1062393..1073022
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QYE84_RS05155 - 1063102..1063959 (-) 858 WP_037537967.1 SDR family oxidoreductase -
  QYE84_RS05160 - 1064028..1065035 (-) 1008 WP_301402768.1 HoxN/HupN/NixA family nickel/cobalt transporter -
  QYE84_RS05165 - 1065248..1065634 (+) 387 WP_037537962.1 hypothetical protein -
  QYE84_RS05170 liaF 1065659..1066360 (+) 702 WP_053019075.1 cell wall-active antibiotics response protein LiaF -
  QYE84_RS05175 vraS 1066357..1067403 (+) 1047 WP_053017422.1 sensor histidine kinase Regulator
  QYE84_RS05180 vraR 1067393..1068022 (+) 630 WP_037551137.1 two-component system response regulator VraR Regulator
  QYE84_RS05185 - 1068085..1069296 (-) 1212 WP_037537956.1 YihY/virulence factor BrkB family protein -
  QYE84_RS05190 - 1069497..1069781 (-) 285 WP_011275378.1 YtxH domain-containing protein -
  QYE84_RS05195 - 1069787..1070251 (-) 465 WP_037537954.1 low molecular weight protein-tyrosine-phosphatase -
  QYE84_RS05200 - 1070393..1070602 (+) 210 WP_080290985.1 DUF1128 domain-containing protein -
  QYE84_RS05205 - 1070616..1071863 (+) 1248 WP_053017420.1 aminopeptidase -
  QYE84_RS05210 - 1071896..1072429 (+) 534 WP_011275382.1 acyl-CoA thioesterase -

Sequence

Protein


Download         Length: 209 a.a.        Molecular weight: 23591.23 Da        Isoelectric Point: 5.0058

>NTDB_id=852852 QYE84_RS05180 WP_037551137.1 1067393..1068022(+) (vraR) [Staphylococcus haemolyticus strain CJFE-402M]
MTIKVLFVDDHEMVRIGISSYLSTQSDIEIVGEGESGKDAIAKAHELKPDLILMDLLMDDMDGVEATTQIKKDLPHIKVV
MLTSFIEDKEVYRALDAGVDSYILKTTSASDIADAVRKTYNGESVFEPEVLVKMRNRMKKRAELYEMLTEREMEILLLIA
KGYSNQEIASASHITIKTVKTHVSNILSKLEVQDRTQAVIYAFQHNLIQ

Nucleotide


Download         Length: 630 bp        

>NTDB_id=852852 QYE84_RS05180 WP_037551137.1 1067393..1068022(+) (vraR) [Staphylococcus haemolyticus strain CJFE-402M]
ATGACGATTAAAGTTTTGTTCGTTGATGACCATGAAATGGTTAGAATTGGGATATCAAGTTATCTATCAACACAATCTGA
CATTGAGATAGTTGGAGAAGGGGAATCTGGTAAAGATGCCATTGCAAAAGCTCATGAATTAAAACCTGATTTAATTCTTA
TGGATTTATTAATGGATGACATGGATGGCGTTGAAGCAACTACTCAAATCAAAAAAGATTTGCCGCATATTAAAGTTGTA
ATGTTAACTAGTTTTATTGAAGATAAAGAAGTATATAGAGCATTAGATGCTGGTGTAGATAGCTATATTTTAAAAACGAC
TAGTGCTAGTGATATAGCCGACGCAGTACGCAAAACTTATAATGGAGAATCGGTATTTGAACCTGAAGTTTTAGTTAAGA
TGCGTAACAGAATGAAGAAACGTGCAGAATTATATGAAATGCTGACTGAGCGTGAAATGGAAATTTTATTATTAATTGCA
AAAGGGTATTCAAATCAAGAAATAGCGAGTGCTTCTCATATTACAATTAAAACCGTTAAAACTCATGTAAGTAATATATT
GAGTAAATTAGAAGTACAAGATAGAACACAAGCCGTAATTTATGCATTCCAACATAATTTGATTCAATAA

Domains

Predicted by InterproScan.

Response regulator receiver domain (Response_reg)

(5-116)

Bacterial regulatory proteins, luxR family (GerE)

(147-202)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  vraR Staphylococcus aureus N315

95.694

100

0.957
  degU Bacillus subtilis subsp. subtilis str. 168

33.929

100

0.364