Detailed information    

insolico Bioinformatically predicted

Overview

Name   agrA   Type   Regulator
Locus tag   QYE85_RS04025 Genome accession   NZ_CP129365
Coordinates   860371..861087 (-) Length   238 a.a.
NCBI ID   WP_001829999.1    Uniprot ID   C0LF82
Organism   Staphylococcus epidermidis strain CKFA-393     
Function   promote expression of competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 855371..866087
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QYE85_RS04010 - 856652..857605 (+) 954 WP_002468995.1 LacI family DNA-binding transcriptional regulator -
  QYE85_RS04015 - 857865..859337 (+) 1473 WP_002469009.1 sucrose-6-phosphate hydrolase -
  QYE85_RS04020 - 859344..860303 (+) 960 WP_002469008.1 carbohydrate kinase -
  QYE85_RS04025 agrA 860371..861087 (-) 717 WP_001829999.1 quorum-sensing response regulator AgrA Regulator
  QYE85_RS04030 agrC 861104..862393 (-) 1290 WP_002440376.1 quorum-sensing sensor histidine kinase AgrC -
  QYE85_RS04035 agrD 862420..862560 (-) 141 WP_001830021.1 cyclic lactone autoinducer peptide AgrD -
  QYE85_RS04040 - 862544..863128 (-) 585 WP_001830005.1 accessory gene regulator B family protein -
  QYE85_RS04045 hld 863446..863523 (+) 78 WP_002494082.1 delta-hemolysin -
  QYE85_RS04050 - 863904..864689 (-) 786 WP_001830000.1 carbon-nitrogen family hydrolase -

Sequence

Protein


Download         Length: 238 a.a.        Molecular weight: 27936.97 Da        Isoelectric Point: 5.6250

>NTDB_id=852811 QYE85_RS04025 WP_001829999.1 860371..861087(-) (agrA) [Staphylococcus epidermidis strain CKFA-393]
MKIFVCEDDQRQREHMVSIIKNYIMIEEKPMELALATNDPYEVLEQSKELNDIGCYFLDIQLEADMNGIKLASEIRKHDP
VGNIIFVTSHSELTYLTFVYKVAAMDFIFKDDPSELKMRIIDCLETAHTRLKLLSKESNVDTIELKRGSNSVYVQYDDIM
FFESSTKSHRLIAHLDNRQIEFYGNLKELAQLDERFFRCHNSFVINRHNIESIDSKERIVYFKNGENCFASVRNVKKI

Nucleotide


Download         Length: 717 bp        

>NTDB_id=852811 QYE85_RS04025 WP_001829999.1 860371..861087(-) (agrA) [Staphylococcus epidermidis strain CKFA-393]
ATGAAAATTTTTGTTTGTGAAGATGACCAAAGACAAAGAGAACATATGGTATCAATCATTAAAAACTACATAATGATTGA
AGAAAAGCCAATGGAGTTAGCCTTAGCAACAAATGATCCTTATGAGGTCTTAGAGCAATCAAAAGAACTTAATGACATTG
GTTGTTACTTCCTTGATATTCAATTAGAAGCTGATATGAACGGTATTAAATTAGCCAGTGAAATTCGTAAACATGATCCT
GTTGGTAATATTATATTTGTAACCAGTCACAGTGAACTGACTTATTTGACGTTTGTTTATAAAGTGGCTGCTATGGATTT
TATTTTTAAGGATGATCCATCTGAATTAAAAATGAGAATCATAGATTGTCTTGAAACAGCACATACACGACTCAAATTAT
TATCAAAAGAAAGTAATGTAGATACGATTGAGTTAAAGCGGGGAAGTAATTCAGTATACGTTCAATATGATGACATTATG
TTTTTTGAATCATCTACGAAATCTCATAGACTCATCGCACATCTTGATAATCGACAAATTGAATTTTATGGAAATTTAAA
GGAATTAGCACAGCTTGATGAACGTTTCTTTAGATGTCATAACAGTTTTGTGATAAACAGGCATAATATTGAATCTATTG
ATTCAAAAGAACGTATTGTTTACTTTAAGAATGGCGAAAATTGTTTCGCTTCAGTACGTAATGTTAAAAAAATATAA

Domains

Predicted by InterproScan.

LytTr DNA-binding domain (LytTR)

(151-237)

Response regulator receiver domain (Response_reg)

(3-120)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB C0LF82

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  agrA Staphylococcus aureus N315

87.815

100

0.878
  comE/comE2 Streptococcus gordonii strain NCTC7865

35.178

100

0.374
  comE/comE1 Streptococcus gordonii str. Challis substr. CH1

35.178

100

0.374