Detailed information    

insolico Bioinformatically predicted

Overview

Name   comA   Type   Machinery gene
Locus tag   QYR08_RS12935 Genome accession   NZ_CP129343
Coordinates   2724342..2726003 (+) Length   553 a.a.
NCBI ID   WP_010873643.1    Uniprot ID   -
Organism   Synechocystis sp. PCC 6803 substr. GT-T strain PCC 6803 isolate DELrpoZ-S1     
Function   DNA uptake (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2719342..2731003
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QYR08_RS12900 (QYR08_12870) - 2719539..2719664 (+) 126 WP_255345203.1 hypothetical protein -
  QYR08_RS12905 (QYR08_12875) - 2719726..2721333 (+) 1608 WP_010873637.1 SpoIID/LytB domain-containing protein -
  QYR08_RS12910 (QYR08_12880) - 2721370..2721714 (+) 345 WP_010873638.1 rhodanese-like domain-containing protein -
  QYR08_RS12915 (QYR08_12885) - 2721943..2722398 (+) 456 WP_010873639.1 RNA recognition motif domain-containing protein -
  QYR08_RS12920 (QYR08_12890) rpiA 2722621..2723328 (+) 708 WP_010873640.1 ribose-5-phosphate isomerase RpiA -
  QYR08_RS12925 (QYR08_12895) - 2723384..2723935 (+) 552 WP_010873641.1 TolB family protein -
  QYR08_RS12930 (QYR08_12900) - 2723992..2724354 (+) 363 WP_223211286.1 hypothetical protein -
  QYR08_RS12935 (QYR08_12905) comA 2724342..2726003 (+) 1662 WP_010873643.1 phospholipase D-like domain-containing protein Machinery gene
  QYR08_RS12940 (QYR08_12910) - 2726107..2727366 (-) 1260 WP_010873644.1 DUF4912 domain-containing protein -
  QYR08_RS12945 (QYR08_12915) egtC 2727944..2728858 (+) 915 WP_010873645.1 ergothioneine biosynthesis protein EgtC -
  QYR08_RS12950 (QYR08_12920) sigC 2728855..2730069 (-) 1215 WP_010873646.1 RNA polymerase sigma factor SigC -

Sequence

Protein


Download         Length: 553 a.a.        Molecular weight: 61256.25 Da        Isoelectric Point: 5.4178

>NTDB_id=852539 QYR08_RS12935 WP_010873643.1 2724342..2726003(+) (comA) [Synechocystis sp. PCC 6803 substr. GT-T strain PCC 6803 isolate DELrpoZ-S1]
MGKLNRGWKPNPVVIFVALALLVAIAVIGIGKVDPLGLGQSLARPDPLPQQEEIQVYFNLNNAKGADFIDPDRDFKRQGD
NFEQIILEQIDQAQSTIDLAVQELRLPRIAQALVEKQKTGVRVRLVLENTYNQTIKEAVETEKDPFRYRGPLAYLDQNQD
GRISPAESAERDAIEILRTQKIPLIDDTEDGSKGSGLMHHKFMVLDNKTVIVTSANFTPSDQHGDYDDNFTRGNANNLLV
VQSPAVAHLFTEEFNLLWGDGPGAEKDSLFGINKPSRPAKVLKVGETTVTVKFSPDRRAIPFPNTSNGLIAQYLNQAQQK
IQLALFVFSEQALSNVINQRFQAGTEVKALIDRGFAFRYYSEGLDLLGVTLLEDCLEQPGNSPWALPTEFVGTPALPRGD
KLHHKFALVDDDTVITGSHNWSPAANHNNDETVLVLQNAQIAAHYQRELDRLYAVTEYGLPPTVQARIDRQEQECANPRP
SPKPLAKATPNRLVNLNRGSQEELESLPGIGPSTAEKIISTREQKAFTSLEDLGRVKGIGPSKIEGLRGKVTW

Nucleotide


Download         Length: 1662 bp        

>NTDB_id=852539 QYR08_RS12935 WP_010873643.1 2724342..2726003(+) (comA) [Synechocystis sp. PCC 6803 substr. GT-T strain PCC 6803 isolate DELrpoZ-S1]
ATGGGAAAACTAAACAGAGGCTGGAAACCAAACCCCGTTGTCATTTTTGTTGCCCTGGCCCTACTAGTGGCGATCGCCGT
CATTGGCATTGGCAAAGTTGATCCATTGGGGTTAGGACAATCCCTGGCCCGACCAGATCCTTTACCACAACAAGAGGAGA
TCCAGGTTTACTTTAACCTCAACAATGCCAAGGGAGCCGATTTCATTGACCCAGACCGCGACTTTAAACGTCAGGGGGAC
AATTTTGAGCAGATAATTCTGGAGCAAATTGACCAAGCCCAGTCCACCATTGACCTAGCAGTACAGGAATTACGCTTACC
TCGCATTGCCCAGGCATTGGTCGAGAAACAAAAGACCGGGGTCCGGGTCAGATTGGTGCTGGAAAATACCTATAACCAAA
CCATCAAAGAAGCAGTAGAAACAGAAAAGGATCCCTTCCGTTACCGTGGTCCCCTAGCCTATTTAGATCAAAATCAAGAC
GGTCGCATTAGTCCCGCAGAAAGCGCAGAACGGGATGCCATTGAAATTCTCCGCACTCAGAAAATTCCCCTCATTGACGA
CACAGAAGATGGCAGTAAAGGCTCAGGCTTAATGCACCATAAATTTATGGTCCTGGATAATAAAACGGTCATTGTAACTT
CTGCTAACTTTACCCCTAGCGACCAGCATGGCGACTATGATGACAATTTTACTCGAGGCAACGCCAATAACCTATTGGTG
GTCCAATCCCCCGCTGTCGCCCATCTTTTCACAGAGGAATTTAATCTACTTTGGGGGGACGGGCCTGGAGCAGAAAAAGA
CAGTCTCTTTGGTATTAATAAGCCCAGCAGACCAGCTAAAGTGCTAAAAGTAGGAGAGACAACGGTAACAGTAAAGTTTT
CCCCCGATCGCCGAGCAATCCCTTTTCCCAACACCAGTAATGGTTTAATTGCCCAATACCTCAATCAAGCCCAACAAAAA
ATTCAATTAGCATTGTTTGTTTTTAGTGAACAAGCATTATCTAATGTGATCAACCAAAGATTTCAAGCGGGCACGGAGGT
TAAAGCTTTAATTGATCGGGGATTTGCCTTTCGTTACTACAGCGAAGGGCTGGATCTATTGGGAGTAACTTTGCTAGAAG
ACTGCCTAGAACAACCTGGTAATAGTCCCTGGGCTTTGCCAACTGAATTTGTCGGTACCCCGGCCCTACCAAGGGGAGAT
AAATTACACCATAAGTTTGCCCTGGTGGATGATGACACCGTGATCACCGGCTCCCACAATTGGTCCCCCGCCGCTAACCA
CAACAACGATGAAACGGTATTGGTTTTACAGAATGCCCAAATAGCAGCCCATTACCAACGGGAATTAGACCGACTTTATG
CCGTCACAGAATATGGTTTACCTCCCACAGTACAAGCCCGCATCGATCGCCAGGAGCAGGAGTGCGCCAATCCCCGACCT
AGCCCTAAGCCCCTGGCAAAAGCAACTCCCAATCGTTTGGTGAATTTGAACCGAGGGAGTCAAGAGGAACTGGAAAGTTT
ACCCGGCATTGGCCCCAGCACCGCCGAAAAAATCATCTCCACCAGGGAGCAAAAGGCTTTCACTTCCCTAGAAGACTTGG
GCCGGGTCAAAGGCATTGGTCCCAGCAAAATCGAAGGTTTACGGGGCAAAGTTACCTGGTAA

Domains

Predicted by InterproScan.

PLD-like domain (PLDc_2)

(86-258)

PLD-like domain (PLDc_2)

(310-452)

Helix-hairpin-helix motif (HHH_3)

(492-552)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comA Synechocystis sp. PCC 6803

100

100

1